Herbinix luporum: SD1D_0548
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Entry
SD1D_0548 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsd
Herbinix luporum
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsd03016
]
SD1D_0548
Enzymes [BR:
hsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SD1D_0548
Transfer RNA biogenesis [BR:
hsd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SD1D_0548
Prokaryotic type
tRNA splicing ligases
SD1D_0548
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Dpoe2NT
Motif
Other DBs
NCBI-ProteinID:
CUH92100
UniProt:
A0A0K8J3M3
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All DBs
Position
I:574029..575231
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AA seq
400 aa
AA seq
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MIEIKGSVSSAKVFTDTIEEGAIAQIKQLCDMEYTKGSKIRIMPDVHEGAGCTIGTTMTI
SDKVVPNLVGVDIGCGMETILITNKHIELQKLDKLIYSKIPSGRNIREKPHKYNDEIDLS
LLRCYKKVNVHRAIHSIGTLGGGNHFIEANKDEEGNIYIVIHSGSRHLGNEVAKYYQDMG
YKRLNGNDKKALEELIAEYKQSGREKELQSAIDNLKKQELTNIPYSLAYVSDDLFEDYIH
DMQIIQRFASLNRKAMADEIIRGMKLDPIEQFTTIHNYIDTEDMILRKGAVSAKLGEKIL
IPINMRDGSLICVGKGNEDWNYSAPHGAGRLMSRIEAKNTFTLSEFKEQMKDIYTTSVSN
DTLDECPMAYKDMTDILNNIEHTAEVIKIIKPIYNFKASE
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaataaagggaagtgtatcatctgcaaaggtgttcactgataccattgaggaa
ggtgccatagcacagattaaacaactgtgcgatatggaatatacaaaaggctcaaaaata
cggattatgcctgacgttcatgagggggcaggctgtaccatcggaactacaatgactata
tcagataaggtagtaccaaatctggttggagtagatataggctgcggcatggagactatt
ctaattactaataagcatatagaactgcaaaaacttgataaattaatatattcaaaaata
ccctccggaaggaatattcgagaaaagccccataaatacaatgatgagattgacttaagc
cttcttcgctgctataaaaaagttaatgtccatagggcaattcattcaataggtacacta
ggagggggtaatcattttatagaagctaataaggatgaggaaggaaatatatatattgta
attcattccggaagccgtcacttgggcaatgaagtggcaaagtattatcaagatatggga
tataaacgtctgaatggaaatgataaaaaagcccttgaagaattaatagctgaatataag
caaagtggcagggaaaaagaattacagtcagcaatagacaatttaaaaaagcaggaactt
acaaatatcccttattctcttgcctatgtcagtgatgatttgtttgaagattatattcat
gatatgcagattatacagcgctttgccagtttaaatcgtaaggctatggccgatgagatt
atccgtggaatgaagttagatcctatagaacaatttaccaccatacataactatatagat
actgaagatatgatattacgaaaaggggcagtatctgccaagcttggtgaaaaaatactt
atacccattaatatgagggacggaagcttaatttgtgtaggaaaaggtaatgaagactgg
aactattcagctccccatggtgcaggcagattaatgagccgaatcgaggcgaaaaacacc
tttactctttcagagtttaaagagcaaatgaaggatatttataccacttcggtaagtaat
gataccctggatgaatgtcccatggcctataaagatatgactgatatacttaataatatt
gaacacactgcagaggtaattaaaatcataaaacccatttataattttaaggcaagtgaa
taa
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