Herbinix luporum: SD1D_0799
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Entry
SD1D_0799 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hsd
Herbinix luporum
Pathway
hsd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SD1D_0799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_0799
Enzymes [BR:
hsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD1D_0799
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SD1D_0799
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Helicase_C
PriA_C
Zn_ribbon_PriA
SLFN-g3_helicase
TrwB_AAD_bind
PIF1
Zot
AAA_30
AAA_19
Viral_helicase1
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CUH92347
UniProt:
A0A0K8J4D0
LinkDB
All DBs
Position
I:864317..866563
Genome browser
AA seq
748 aa
AA seq
DB search
MSYQKFADIIIDISHEDLDKTYQYAIPKQYLSLAVIGALVVVPFGNGNRTINGYIVGLSH
KPKISIEKIKPIYQVVKDAPVIESHLIYLAYWMKETFGGTMNDALKTVIPVKKAVKIKEK
RRIVLIKPYDELYEIYQEQSKKNNVARVRLLEALLKNNILDYNEAIDKLKISRPVLKWFE
ENQLIKIESKQLYRNPIEQKNVSKELVILNEEQRYIADCIIKDYNEGYRYTYLIHGVTGS
GKTEVYMEIISQVIARGRQVIVLIPEIALTYQTVNRFYDRFGDRVSILNSRMSDGERYDQ
SLRAKNGEIDIIIGPRSALFTPFKNLGLIIIDEEHEGSYKSEITPKYHATMVARKRAELN
NAFVILGSATPSLESYQKGISGEYKLFSLTKRAKEAALPKIWIVDLREELKEKNRSIFSR
KLKELIMDRLEKKEQIMLFINRRGFSGFVSCRSCGHVMKCNHCDISLTYHIQGKLLCHYC
GYEEAMPKICPACGSKYIASFGTGTQKVEEMVRREFPEARVLRMDTDTTKNKGGHQKILE
AFAEHKADILVGTQMIVKGHDFPLVSLVGIIAADLSLYAGDFRAAERTFQLLSQAAGRAG
RDAIPGEVVIQTYNPDHYSITTAAEGNYQEFYEQEMLYRQLMQYPPAANILLLLVSSKDE
EKVDKAIVYAGEVLKEYSNQNQHSFKVIGPAPATIAKAKDIYRRVIYIKDEDYNLLVALK
NYLELCFSSSKHFQDCTYQFDFNPMSVY
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatcaaaaatttgcagatataataattgatatatcccatgaggatttggacaag
acatatcagtatgctattccaaagcagtacttatctttagctgtcataggagctttagta
gtagttccctttggaaatggtaatcgtacgattaatggatatatagtaggcttgtcccat
aagccaaaaatcagtattgaaaagattaagcccatataccaggtggtaaaagatgccccg
gtaattgaaagtcatttaatttatcttgcctattggatgaaggaaactttcggcggaaca
atgaacgatgccctaaaaactgttataccggtaaaaaaggcagtaaaaataaaggaaaaa
agacggattgtactgataaagccatatgatgagctatatgaaatttatcaggaacaaagc
aaaaaaaacaatgtggcaagggtaaggttacttgaagccttgttaaagaacaatatacta
gattataatgaagctatagataagttgaaaatcagcagacctgtattaaagtggtttgaa
gaaaatcagctgattaaaatagaaagcaaacaactttaccgtaatcctattgagcagaaa
aatgtttctaaggaactggtaatccttaatgaagaacaaaggtatattgccgattgtatt
attaaggattataatgaaggctatcgttatacttatttaatccatggggttaccggcagc
ggtaagaccgaggtttatatggaaattatatctcaggtaatagcaaggggcaggcaggta
attgttttaattcctgagattgccctaacttatcagactgttaaccgattttatgacaga
tttggagatcgggtttctatcttaaattccagaatgtcagatggagaacgatacgatcaa
agcctaagggctaaaaatggtgaaatagatataattatcggtcctagatctgccttgttt
accccttttaaaaatctaggactgataataattgatgaagagcatgaaggaagttacaaa
agtgaaattacaccaaaatatcatgctactatggtagcaagaaaaagagctgagcttaat
aatgcctttgtaatccttggttctgccacaccatctttagaatcttatcagaagggaatt
tccggcgagtataagctttttagcttgactaagagggcaaaggaagcagctttgcccaag
atttggattgtagatttgcgagaagagttaaaagaaaagaacagatcgatttttagcagg
aagctaaaagaattgataatggatagattagaaaagaaggagcagattatgctctttata
aatcgccggggattttcaggttttgtatcatgcagaagctgtggccatgtaatgaaatgt
aaccactgtgatatatctttgacctatcatatacagggcaagcttctttgtcattactgt
ggatatgaagaagcaatgccaaagatatgtcctgcttgtgggtcaaaatatattgccagc
tttggtacaggaacccaaaaggttgaggaaatggtaagacgggagtttccagaagccaga
gtgcttaggatggatacggataccacaaaaaataaagggggacatcaaaagatactggaa
gcctttgcagaacataaggcagatattttggtgggaacccagatgattgttaagggacat
gattttcccctagtatctttggtgggaattattgctgctgatttatctctttatgcagga
gattttagagcggctgaaagaaccttccaacttctatcccaagcagccggaagggcagga
agggatgctatacccggagaggttgttattcaaacatacaatcctgatcattatagtatt
actacggcagcagaaggaaattaccaggaattttatgagcaggaaatgttatatagacaa
cttatgcagtatcctccggcggctaatattctattacttcttgttagctcaaaggatgaa
gaaaaggttgataaagctattgtctatgcaggagaagttttaaaagaatattcaaatcaa
aatcagcactcttttaaagtgataggtcctgctcctgcaaccatagcaaaagctaaggat
atttaccgcagggttatatatattaaggatgaggattataatttacttgtagctttaaaa
aattatcttgagttatgctttagtagctctaagcatttccaagactgtacttatcaattt
gattttaaccctatgagtgtatattag
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