Herbinix luporum: SD1D_0888 Help Entry SD1D_0888         CDS       T04072                                  Name (GenBank) hypothetical protein   KO K03763   DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] Organism hsd  Herbinix luporum Pathway hsd03030   DNA replication hsd03430   Mismatch repair hsd03440   Homologous recombination Brite KEGG Orthology (KO) [BR:hsd00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     SD1D_0888    03430 Mismatch repair     SD1D_0888    03440 Homologous recombination     SD1D_0888  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:hsd03032]     SD1D_0888    03400 DNA repair and recombination proteins [BR:hsd03400]     SD1D_0888 Enzymes [BR:hsd01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.7  DNA-directed DNA polymerase      SD1D_0888 DNA replication proteins [BR:hsd03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     DNA polymerase III holoenzyme      SD1D_0888 DNA repair and recombination proteins [BR:hsd03400]  Prokaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     DNA polymerase III holoenzyme      SD1D_0888 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 Rv2179c-like tRNA_anti-codon RNase_H_2 DNA_pol3_a_NII DEDDh_C Glyco_transf_10 Motif Other DBs NCBI-ProteinID:  CUH92436 UniProt:  A0A0K8J451 LinkDB All DBs Position I:955531..960060 Genome browser AA seq 1509 aa AA seqDB search MLFFEAFEGLTCDDKLIDLYSQAEVVRVVASRKNRTIQIHIKSNRLIHSKNIKRMEELLN RQLFLHTGNKAYIKPYFELNSDYNLEKLFSIYRDCILEELKEESIVTYHILTQAETKIEE NKIIIKSTESCVVKDKLEKLKDYLIDLFKERFGYDINVAFEYVKPKEEKKVKLPAFLRQD DEEDYDDDEEYANHHYEFVKAESIRVDNLTEDAGVKEPSNYAIDNKEVSNTIETPVPSDN KSGNGNANKSKKSTYYRLPKDPSVVYGRNFEGNVISISDIIGEIGEVVIRGMVRKLETRP IGNEKSLITFVLTDFTDSIKVKLYAKTIQVDEILDSIKEGSFYMLKGIAMADTYERDITI GSVVGIKTIEDFRSKRIDRAPKKRVELHAHTMMSDMDAVVDVKKLVRRAFEWGHPAVAIT DHGVVQAFPDANHALNPKAFSDPKEQERAKAFKVIYGMEAYLVDDIKEVVVGGQGQSLID NDFVVFDIETTGFSKINDKIIEIGAVKISKGEITERYSTFVNPQIPIPYEITQLTTINDD MVAQAPVIEEVLPEFLEFCKGAVLVAHNAAFDMGFIIRNAQILGLNHKFTYIDTVGLSRI LLPNLSRHKLNNVAKALGVSLENHHRAVDDAGATAEIFVKFIDMLKERNVDNVNEIDKLG RLPAESIRKLPAYHAILLAKNDLGRVNLYKMVSMSHIEYYNKRPKIPKSLLMECREGILV GSACEAGEIYRALLSNQSDEQIERLVNFYDYLEIQPLANNEFLIHSERSDERNIHSKEDL IKINQRIVELGEIYNKPVVATCDVHFLDPEDEVYRRIIMAGKGFKDADNQPPLYFRTTEE MLEEFSYLGSKKAEEVVITNTNLICDQIEKISPVRPDKCPPVLPNSDENLRKICYDKAHA IYGKELPSQVKERLEHELTSIISNGFAVMYIIAQKLVWKSNEDGYLVGSRGSVGSSFVAT MAGITEVNPLPPHYYCSSCNYSDFDSEEVKKFAGSSGCDMPDKNCPVCGKPLEKDGHDIP FETFLGFDGDKEPDIDLNFSGEYQSRAHEYTEEIFGEGHTFRAGTIGTLADKTAFGFVKN YFEERGIHKRNVEIERLIEGCVGVRRTTGQHPGGIVVLPHGEEIYSFTPVQRPANDMNSK TITTHFDYHSIDHNLLKLDILGHDDPTMIRMLEDLTGVDAKTIRLDEKKVLSLFSDTSAL GITPDDIGGCELGCLGVPEFGTDFVMQMVKEAQPKTFSDLVRISGLSHGTDVWLNNAQLL IKEGTCTLSTCICTRDDIMTYLINAGMEPGLSFKIMESVRKGKGLTAEMEEAMLAAGIPE WYIRSCKTIKYMFPKAHAAAYVMMAFRIAYFKVYYPLAYYCAYFSIRASAFNYELMCQGR EHLEQVMADYKRRYSTLTKKEQDTYRDMRIVQEMYARGFDFVPIDVYKAQAHRFQIVGDK LMPSLSSIDGMGDTAAKGVVEAAKQGKFLSRDDFKIRSKVSSTVVDTMARLGLLGDLPQS NQMSLMDFL NT seq 4530 nt NT seq  +upstreamnt  +downstreamnt atgttattttttgaagcttttgaaggattgacctgtgatgacaaattaatagatctttac agccaggctgaagttgtaagggtggttgcatccaggaaaaacaggaccattcaaattcat attaaaagtaatagattgattcatagtaaaaacataaaaaggatggaagaactgcttaat cggcagctttttttacataccggaaataaagcatacattaaaccgtattttgagcttaat agtgattataatctggaaaagcttttttctatatatcgtgactgtatcttagaggaacta aaagaggaaagtattgttacttatcatattttgacacaggcagagactaaaatcgaagaa aacaaaattattattaagtcaactgaaagctgtgtggttaaggataaactagaaaagctt aaggattatcttatagatttgtttaaggaacgtttcggttatgatataaatgtagccttt gaatatgtaaagcctaaggaagaaaaaaaggttaaattgcctgcttttttaagacaggat gatgaggaggattacgacgatgatgaggagtatgcaaatcatcattatgaatttgttaaa gcagaaagtataagagtagataatcttacagaagatgctggagttaaggaaccttctaat tatgctatagataataaggaggtaagtaataccatagaaacacctgtacccagtgataat aaaagtggaaatggtaatgctaataaatctaaaaaatccacatattatagattacctaaa gatccttccgtagtatatggcaggaattttgaaggaaatgtaatatctatcagtgatatt atcggtgaaatcggtgaagtagtaatccggggaatggtcaggaagttagagacaagaccc ataggtaatgagaaaagcttaattacctttgtcttaacggattttactgattctataaag gtaaagctgtatgcaaaaactattcaagtagatgaaatcctagatagtattaaagaaggt tccttttatatgttaaagggaattgccatggcagatacttatgagagggatattaccata ggatctgtggtaggtattaagaccatcgaggattttagaagcaaaagaattgacagggcc cctaaaaagcgtgtggagttacatgcccataccatgatgagtgatatggatgcagtagtg gatgtaaaaaaattggttcgccgtgcttttgaatggggacatcctgcagtggcaataaca gaccatggtgtagtacaagccttccccgatgcaaatcatgccctaaatccaaaggcattt tctgatcctaaggagcaggaaagagctaaggcttttaaggttatttatggtatggaagca tacctagtagatgatattaaggaagtggtagtaggtgggcagggtcaaagccttatagat aatgattttgttgtatttgacattgagaccaccggttttagtaagataaatgataaaatt attgaaattggagcggtgaagatatcaaaaggggaaattaccgaaagatatagtacattt gtaaatcctcagataccaatcccatatgagattacccagttgactaccattaatgatgat atggttgcccaggcccctgtcatagaagaggttcttccggagtttttggaattttgtaag ggtgccgtattagtggcccataatgcagcctttgatatgggctttattataagaaatgct cagatactcggtttaaatcataaatttacctatattgataccgtcggtttatcaagaatc ctgcttcctaatttaagcagacataagctaaacaatgtagcaaaggcactaggggtatca ttagaaaatcatcatagggcagtagatgatgccggtgctaccgctgagatttttgttaag tttatagatatgctaaaagaaagaaatgttgataatgtaaatgaaatcgataagctggga aggcttcctgcagagtctattcgtaagcttcctgcttatcatgccatactactggccaaa aatgatctgggacgggttaatttatataagatggtttccatgtcccatatagaatattat aataagaggcctaaaatacccaagagtcttttaatggaatgcagggagggtatcctagta gggtctgcctgtgaagccggtgagatatatagggcattactttctaatcaatcagatgaa cagattgaaagactggttaatttctatgactatctggaaatacagccactggctaataat gaatttttaatccacagtgagagaagcgatgaaagaaatatccattccaaggaagatttg ataaagattaatcaaaggattgtagagcttggagagatatataataagcctgttgtcgcc acctgtgatgtgcattttcttgatcctgaggatgaggtgtaccgcagaatcataatggcc ggtaagggctttaaggatgcagacaatcagcctcccctgtattttaggactaccgaggag atgctggaggagttttcatatttgggtagcaaaaaggcagaagaggtggttatcaccaat actaacctgatatgtgatcaaatcgaaaagatatcaccggtgcggccggataaatgtcct cctgtacttccaaattccgatgaaaacctaagaaaaatctgctatgataaagcccatgct atttatggtaaagagcttccgtcccaggttaaagaaaggctggaacatgagcttacatcc attatatccaacggatttgcggttatgtatataattgctcagaagctggtatggaagtcc aatgaggacgggtatctggtaggttcccgtggctctgtgggatcttcttttgtagctacc atggcaggaattacggaagttaatcctttaccccctcattattactgcagtagctgtaat tatagtgattttgattctgaggaagtaaagaagtttgcaggaagttccggatgcgacatg ccggataagaattgtcctgtatgcggcaaacccttagaaaaagacggccatgatataccc tttgaaaccttcctcggttttgatggggataaggagccggatatagacttaaacttttcc ggtgaatatcaaagcagggcccatgaatatacggaggaaatattcggcgaaggccatact ttccgtgccggtactatcggaaccttagctgataagactgcctttggttttgtaaaaaat tattttgaggaacggggcatacacaagagaaatgttgagatagaacgtttgattgagggc tgtgtaggagtaagacgaaccaccggtcagcatcccggtggtatagtggtattaccccat ggagaagaaatatattcatttacccctgttcagcgtcctgctaacgatatgaattccaag accattaccacacattttgattatcactccatagaccataacttattaaagttagatata ctgggccacgatgatcctaccatgattcgtatgctggaggatcttacaggagtagatgcc aagactattaggcttgatgagaagaaggtattatctttgtttagtgataccagtgccctt ggtataactcccgatgatattgggggatgtgagctaggctgtcttggtgttcccgaattt ggaacggatttcgttatgcagatggttaaggaagcgcaaccaaagactttctcagacttg gtccgtatatcgggacttagccatggtactgacgtgtggctaaataatgctcagctactt attaaagaaggaacctgtaccttgtctacctgtatctgtacccgtgatgatataatgact tatctaattaatgcaggaatggagccggggctttcctttaagattatggaaagtgtaaga aagggtaaaggcttaactgctgaaatggaagaagccatgctggcagcaggaattcctgaa tggtatatcagatcctgtaaaaccataaagtatatgttccccaaagcccatgcggcggca tatgttatgatggcctttcgtatagcttactttaaggtatattatcccttagcttactac tgtgcctatttttctatccgtgcatcggcatttaactatgagctgatgtgccagggaagg gaacatctagaacaggtaatggctgactacaaacgtagatatagtaccctgactaagaaa gaacaggatacatatcgagatatgcgtatagttcaagagatgtatgctagaggatttgac tttgtacccatagatgtgtataaagcacaagcccatagattccagattgtaggagataag cttatgccttccttaagttccatagacggaatgggagatacggcagctaaaggggtagta gaggctgcaaaacaagggaaatttttatccagagacgattttaagatacgtagtaaggta agctctacggtggttgatactatggcaagactggggcttttaggagatcttccccagtcc aatcagatgtctttgatggattttttataa

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