Herbinix luporum: SD1D_0921
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Entry
SD1D_0921 CDS
T04072
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hsd
Herbinix luporum
Pathway
hsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD1D_0921 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsd03019
]
SD1D_0921 (pnp)
03016 Transfer RNA biogenesis [BR:
hsd03016
]
SD1D_0921 (pnp)
Enzymes [BR:
hsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SD1D_0921 (pnp)
Messenger RNA biogenesis [BR:
hsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SD1D_0921 (pnp)
Transfer RNA biogenesis [BR:
hsd03016
]
Prokaryotic type
tRNA degradation factors
SD1D_0921 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_PNO1_2nd
KH_KhpA-B
KH-I_KHDC4-BBP
KH_N4BP1_2nd
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
CUH92468
UniProt:
A0A0K8J552
LinkDB
All DBs
Position
I:993747..995840
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AA seq
697 aa
AA seq
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MYKSYSMELAGRTLTVEIGRVAGQANGAALMHYGDTVVLSTATASDKPREGIDFFPLSVE
YEEKLYAVGKIPGGFIKREGKPTENAILTSRVIDRPMRPLFPKDYRNDVTLDNLVLCVDQ
DCSPELTAMLGSSIATCISDIPFNGPIASTMVGLVDGEFVFNPTSAQREKSDMALTVAST
RDKVIMIEAGANEIPEDKMIEAIYAAHDLNKTIIEFFDKIVADCGKPKHDYVKFEIPEDL
YEDMVNFITPEGMEQAVFTDEKQVREANLKEITEKLTARYEEEHPEWIPLLGEAIYKFQK
NTVRKMILRDKKRPDGRKAEEIRKLSAEIDILPRTHGSGMFTRGQTQVLTVTTLGALAET
QRLDGIDENETVKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAEKALVPVLPSEEEF
PYAIRTVSEVLESNGSTSQGSICASTLSLMSAGVPIKAMVAGISVGLVTGDSDDDYIILT
DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKINGLTREIIEKAIYRTREARLYILDEVMA
PVISEPRPEVGPYSPKIVQIKIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSIC
GLDKESIDKAAKMIQMIVTDFEEGKVYEGKVISIKDFGAFIEFAPGKEGLVHISKISKKR
IEHVEEVLTLGDKVKVVCLGQDKMGRVSFSIKDVKDN
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaagttattcaatggaacttgccggtagaactcttactgtagagataggcaga
gttgccggacaggctaatggagctgctttaatgcattacggtgataccgttgtactatca
actgcaacagcatccgataagcctagagaagggattgatttctttcccttaagtgttgag
tatgaggagaagctatatgccgtaggtaaaattcccggaggctttattaagagggaagga
aagcctacagagaatgctatacttacctcccgtgttatcgaccgtcccatgagaccttta
tttccaaaagattataggaacgatgtaactttagataacctggttctttgtgttgaccag
gattgctcaccggagcttacagccatgcttggatcatcaattgctacctgtatttctgat
attccctttaatggaccgattgcctcaactatggttggattagttgacggagaatttgta
tttaatcccacatcggcacaaagggagaagtccgatatggctcttacagtggcttccact
agagataaagtgattatgatagaagcaggggccaatgaaattcctgaggataagatgatt
gaggctatatatgcagcccatgatcttaataagactattatagaattttttgataagatt
gtggcagattgcggtaagccaaaacatgattatgttaagttcgagatacctgaggattta
tatgaggatatggtgaattttataactcctgaaggtatggagcaggctgtatttacagat
gaaaagcaagtaagagaagccaatcttaaggaaattacagaaaagttaacagcccgttat
gaagaggagcatcctgaatggatacctttacttggtgaggctatatataagttccagaaa
aataccgttcgtaagatgattttaagggataagaagcgtcctgatggaagaaaggccgaa
gaaattagaaagttatctgcggagattgatattcttcctaggacccatggttcaggtatg
tttacccgtggccagacccaggtacttacagttactaccttaggggctttggctgaaacc
caaagactagacggtattgatgaaaatgagacagtaaaacgttatatgcatcattataat
tttccttcctattccgtaggtgaaacaagaccttcaagaggtcccggaagacgtgaaatc
ggtcacggtgcattggctgaaaaggcattggtgcctgtacttccttcagaagaagaattt
ccttatgctatccgtaccgtatcagaggtattagagtctaacggctcaacatcccaggga
agtatctgtgcttccaccctgtcacttatgtctgccggggtgccaattaaggcaatggtt
gccggtatatctgtaggcttagttacaggagattctgatgatgattatataattcttaca
gatattcaaggtctagaggacttctttggagatatggactttaaggttgcaggtacccat
aaaggtattactgcaatacagatggatataaagattaacggcttaactagggaaataata
gaaaaagctatttatagaactagggaagctagattatatattttagatgaggttatggct
cctgttatttctgagccaaggcctgaggttggaccttattcaccaaaaattgtacagatt
aagatagatcctgccaagattggtgatgtagtgggtcaaagaggtaagactattaacgca
ataatcgagcagaccggagtaaaaattgatataacagatgatggtgctgtgtctatctgt
ggtttagataaggagagcattgataaagctgctaagatgatacaaatgatagtaactgat
tttgaagagggtaaggtttacgaaggtaaagttattagtatcaaggatttcggtgccttc
atagaatttgctcccggtaaagaaggtttagttcatatatcaaaaatctctaaaaagaga
attgaacatgtggaagaggtcttaaccttaggagataaggtaaaggttgtttgcttagga
caggataagatgggaagagtatcctttagtattaaggatgtaaaagataactaa
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