Herbinix luporum: SD1D_1041
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Entry
SD1D_1041 CDS
T04072
Symbol
ytzG
Name
(GenBank) putative RNA pseudouridine synthase YtzG
KO
K06183
16S rRNA pseudouridine516 synthase [EC:
5.4.99.19
]
Organism
hsd
Herbinix luporum
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hsd03009
]
SD1D_1041 (ytzG)
Enzymes [BR:
hsd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.19 16S rRNA pseudouridine516 synthase
SD1D_1041 (ytzG)
Ribosome biogenesis [BR:
hsd03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
SD1D_1041 (ytzG)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-ProteinID:
CUH92587
UniProt:
A0A0K8J538
LinkDB
All DBs
Position
I:1126814..1127551
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AA seq
245 aa
AA seq
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MAKLLRLDKYLSDMNIGSRSEIKIWIRKGRVCINSVPCKKPEEKVEINKDEVCFDGKIIK
YEKYIYLMLNKPAGFVSATKDKKDKTVIDLISDIPHKDLFPVGRLDKDTEGLLLITNHGE
LAHQLLSPKKKIDKVYYARIEGRVTTDDVEAFLSGISIGEEKPCLPAKLNILVSGDISEI
ELTICEGKFHQVKRMFEAVGKKVIYLKRISMADLPLDPNLAPGEYRRLTDGEIEHLKNIT
SLKKE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcttttaagacttgataaatacttatcggatatgaatataggcagcagaagt
gaaattaaaatatggataaggaagggaagagtttgtatcaattctgtcccttgtaaaaaa
ccagaggaaaaggtcgagattaataaagatgaagtatgttttgacgggaagataataaaa
tatgaaaaatatatttatcttatgcttaataaaccggcaggatttgtatctgctacaaaa
gataagaaggataagacagttatagatttgataagtgacatcccccataaggatttgttt
cctgtgggaagactggacaaggatactgaagggcttcttttaataactaatcatggagaa
ttggcacatcaattactgtccccaaaaaagaaaatagataaggtttattatgcaagaatt
gagggtagggttacaactgatgatgtagaagccttcttatcaggaatttctataggtgaa
gaaaaaccctgccttcctgcaaaacttaatatcttagtatccggtgatatatcagaaata
gaacttactatttgtgaaggtaagtttcatcaggtaaaaagaatgtttgaggcagtagga
aaaaaggttatttatctaaaaaggatatccatggccgatttacctttagaccctaatttg
gcaccgggggaatataggcggttaacagatggggaaatagaacaccttaaaaatattaca
tcactaaagaaggagtaa
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