Herbinix luporum: SD1D_1355
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Entry
SD1D_1355 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
hsd
Herbinix luporum
Pathway
hsd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SD1D_1355
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsd02000
]
SD1D_1355
Transporters [BR:
hsd02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
SD1D_1355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
DYN_lid
Motif
Other DBs
NCBI-ProteinID:
CUH92901
UniProt:
A0A0K8J5F0
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All DBs
Position
I:complement(1453474..1455081)
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AA seq
535 aa
AA seq
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MLTKKLTKVLLLITVFTIALYGCSGDKEDTDKSKTPANGKLSFAEPVEAAKSEPTYGGSI
TVGITQDLDGLDPHKALSAGTKEVLFNIFEGLVKLDYNGNLVPAVAESYHISEDGMLYTF
TLREGVKFHDGRLVTAQDIVYSIKRCAGMLEPKDPTVIVESALSVISDVTSIDEKTIEIR
LKQVDTELLPYLACSIVPRDYDQLDTKPIGTGPFKFVSYTPLQNIVLEKNEEYYMEGVPY
LDRVTFKISSNTDAAFMELQGGNIDILPYITDSQASKLPSGYHMESGPMNLIQGLFINNK
VEPFDNKLVRQALCYGIDRQAVIDMVAGGRGDVIGTNMYPGFKKYYDESLVNTYPYNPEK
AKELLKEAGYPHGFKFTITVPSNYQYHIDTAQVIVEQLKQIGITAQIQLIEWTSWKSDVY
KGRNYETTVVGLAAELAPRQALARFYSDAENNFMNYINPEFDTLYKQGEIETAEDKKIQL
YKQMQAMLTNDAVAVYIQDPHQMTAVSDKLGGYTYYPIYVQDMSLVYYKKGMESD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgcttacaaaaaaactgactaaagtattacttcttattacagtatttactattgcactc
tacggatgtagtggcgataaggaagatacggataagagtaaaactcctgcgaatggtaaa
ttgtcttttgctgaacctgtggaagcggcaaaatcagagccgacttatggaggttcaatc
acagtaggaataacccaggatttggatggtcttgacccgcacaaagcattgtcggcagga
actaaagaggttttattcaacatttttgagggcttagtaaagcttgattataatgggaat
ttagttccggctgtagcagaaagctatcatatttcagaagatggaatgctttataccttt
accctacgggaaggtgtgaaatttcatgatggcaggcttgttacagcccaagatatagta
tattctataaaaagatgcgccggaatgctagaaccgaaagatccaacggttatagtagaa
tcggcgctttctgttatttctgatgtgacaagcatcgatgaaaagacaattgaaattcgc
ttaaagcaggtagatacagagctgcttccatatttagcatgttctatagtgccaagggat
tatgatcagttggataccaagcctattggtaccgggcctttcaagtttgtatcctataca
cccttacagaacattgtcttagaaaaaaatgaggagtattatatggaaggggtgccttat
ttggacagggttaccttcaagatatcatctaatacagatgctgcatttatggaacttcaa
gggggaaatattgatattcttccatatattactgactctcaagcctccaagcttccaagt
ggataccatatggaatcaggaccaatgaatctgattcagggactatttattaataataag
gtagaaccttttgataataagctggtcagacaggctctgtgctacggaatagataggcag
gctgtaattgatatggtagcaggaggtcggggagatgtaatcggaaccaatatgtatccc
ggatttaagaagtattatgatgaaagccttgttaatacctatccatataatcccgaaaag
gctaaggaattattaaaagaagcagggtatccccatggatttaaatttacaataacagtt
ccttcaaattatcagtatcatattgatactgctcaggtcatagtggaacagctaaagcag
attggtattacagcccagatacagttaattgaatggacaagctggaagtctgatgtatat
aaaggcagaaactatgagacaaccgttgtaggacttgctgcagaactggcaccaaggcag
gctttggctcgtttttactcggatgcggaaaataattttatgaactatatcaacccggaa
tttgataccctttataagcaaggggaaatagaaacagcagaagataaaaagatacagcta
tataagcaaatgcaagctatgctaaccaatgatgctgttgcagtatatattcaggatccc
catcagatgactgcagtcagtgataaattagggggctatacctattatccgatttatgtt
caggatatgtcactggtctattataaaaaaggaatggaatccgattaa
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