Herbinix luporum: SD1D_1508
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Entry
SD1D_1508 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hsd
Herbinix luporum
Pathway
hsd03420
Nucleotide excision repair
hsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD1D_1508
03430 Mismatch repair
SD1D_1508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_1508
Enzymes [BR:
hsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD1D_1508
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD1D_1508
MMR (mismatch excision repair)
Other MMR factors
SD1D_1508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CUH93054
UniProt:
A0A0K8J6L4
LinkDB
All DBs
Position
I:complement(1599981..1601669)
Genome browser
AA seq
562 aa
AA seq
DB search
MGSGIITLRDSYEKIDIEHHFKVNAGPGAGKTTWLINHIRNVVQHSNRLGQVKKVACITY
TNVAAGKIISNLGDACEYVEIGTIHSFLYKHIVKPYVSFLNIPELAVKEIKGHDDYGPNK
SILYSVKEQSKQVYLKDKDLLEALLDLQWKFDSKGILQVLPRKIFKFKIKKETYIIYKKI
CWSMGILHHDDVLYFSWRLINEFPSILDILRAKFPYIFVDEFQDTNPIQAEILKKIAEKE
SIVGVIGDKAQSIYKFQGADVNQFINFNLNGMKEYKIEGNHRSTEEIISILNIVRNDPTF
VQYSPENRHGCKPRIMVGDVMATYKRAKQICGKQTLWTLCYKNVTSNCLKNGYDVKDENI
ILEDIITNDSNPKRAKQLYYVISSIENARDNKIKDALKFMKRAMRKEDADRTALYQLQYF
LDNYEIIKDKTLTEFYNTYFDEKVFDKSKITKGSVKDFYDSKKYSDMALAVKIDDDDCIN
RTIHKAKGDENNCVMVIIPESDDKTNYGLDFILNPNIAFEENRVYYVALSRAREKLFISI
PKINDEVKDRLMKVGFEIENCS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgggttctggaataattaccttaagagatagttatgagaaaattgatattgaacatcat
tttaaagttaatgctggaccgggagcaggaaaaactacgtggcttatcaatcacattcga
aatgtagttcagcattccaatcgcctcggacaagtaaaaaaagtggcctgcattacatat
accaacgttgcagcaggtaagattatttcgaatctcggtgatgcatgcgaatacgttgaa
attggtacaattcattcttttttatataaacatattgtcaaaccatatgtttcattttta
aatattccggaattagctgtcaaagaaataaaggggcacgatgattatggtccaaataaa
tcgattctgtacagcgtaaaggaacaatccaaacaagtatatttgaaagataaagatctc
ttggaagctttacttgatttacagtggaaatttgacagtaagggcattttgcaagtctta
cctcgtaaaatatttaaatttaaaattaaaaaagaaacatatatcatctataaaaaaatc
tgctggagcatgggtatattgcaccacgacgatgtcttatactttagctggcgtcttatt
aatgaatttccttctattcttgatattttaagggctaaatttccatatatttttgttgat
gagtttcaagatactaatccaattcaagcggaaatattaaaaaaaatagcagaaaaagaa
agcatagttggcgtaataggagacaaggctcaatcgatatacaagtttcagggagctgat
gtcaatcagtttattaattttaatcttaatggaatgaaagaatataaaattgaaggaaac
catcgcagcacagaagaaattatcagtattttgaatatcgtaagaaatgatccaacattt
gttcaatatagtcctgaaaacagacatggatgcaagcctcgaataatggttggcgatgtt
atggcgacttataagcgggctaagcaaatttgcggcaagcagaccctatggacgctttgc
tataaaaatgttacatcaaattgtttaaaaaatggatatgatgtaaaagatgaaaatatt
attctggaagatattataaccaacgatagcaatccaaaacgtgcaaaacaactctattat
gttatttcttctattgaaaatgccagagataacaagataaaggatgctcttaaattcatg
aaacgagcaatgcgtaaagaagatgctgaccggacggccttatatcaattacagtatttt
cttgataattatgagattatcaaagataagacacttacagaattctataatacatatttt
gatgaaaaagtatttgacaaaagcaaaatcactaaaggaagcgtcaaagacttttacgat
tcgaaaaaatacagcgatatggctcttgctgtcaaaattgacgatgatgattgcataaac
agaacgatccataaagccaaaggtgatgagaacaactgtgttatggttattattccagag
agcgatgataaaactaattatgggcttgatttcatactaaatcctaatattgcttttgaa
gaaaatcgtgtttattatgtcgctcttagtcgtgctcgagaaaaactttttatctcaatt
ccaaaaataaatgacgaagtaaaagataggcttatgaaagttggttttgaaatagaaaat
tgctcatag
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