Herbinix luporum: SD1D_1616 Help Entry SD1D_1616         CDS       T04072                                  Symbol rnjA Name (GenBank) Ribonuclease J 1   KO K12574   ribonuclease J [EC:3.1.-.-] Organism hsd  Herbinix luporum Pathway hsd03018   RNA degradation Brite KEGG Orthology (KO) [BR:hsd00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     SD1D_1616 (rnjA)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hsd03019]     SD1D_1616 (rnjA) Messenger RNA biogenesis [BR:hsd03019]  Prokaryotic type   Bacterial mRNA degradation factors    RNA degradosome components     Ribonucreases      SD1D_1616 (rnjA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6 NES_C_h SIS_2 DUF7600 Motif Other DBs NCBI-ProteinID:  CUH93162 UniProt:  A0A0K8J788 LinkDB All DBs Position I:complement(1721879..1723756) Genome browser AA seq 625 aa AA seqDB search MKEKETTAVLKNRRTINVRKNRDAADIGSEKNVSRRNSSRTIAKTSNKEAQALLNKNDKK SQQTVRSNKKDQNTDKKSALKIIPLGGLEKIGMNITAIEYEDTIIVIDCGLSFPEDEMLG IDFIIPDVTYLKENIEKVKGFVITHGHEDHIGALPYILKDINVPVYATKLTTAIIENKLK DHNLLKATKRKVIKYGQSINLGCFRIEFVRTNHSIADAAALAIFTPAGIIFHTGDFKIDY TPVFGEPIDLQRIGEIGKKGVLALMCDSTNAERSGYTMSESTVGKTFDSIFADYNKQRII VATFASNVDRVQQIVNSAVKYGRKVVIEGRSMINIVTTASELGYINIPDGVLIDIEHMKN YTDDQLVLITTGSQGESMAALSRMAASIHRKVVIKPGDVVILSSTPIPGNEKSVSRVINE LSMKGAKVIYQDTHVSGHACQEEIKLIYALTKPKYAIPVHGEYRHLIRHAEVAQMMGLPK ENIFLLSSGDVLSITEDSAAVTDEVTSQGILVDGLGIGDVGNIVLRDRQMLSENGLLIVV ISLEKGTNQILAGPDIVSRGFVYVREAENLMEEAREIVEKALDKCLSKSYTDWNKIKTEI KDSLNDFIWKKTKRTPMILPIIMEV NT seq 1878 nt NT seq  +upstreamnt  +downstreamnt ttgaaggaaaaagaaacaacagcagtattaaaaaataggagaactattaatgttagaaaa aatagagatgctgcagacataggtagcgaaaaaaatgttagcagaagaaacagtagtaga actatagctaagacaagcaacaaggaggcacaagctttattaaataaaaatgataaaaaa tcacagcaaacagtaaggtcaaataaaaaggatcaaaatactgataagaaaagtgcctta aagattattcccctaggcggtcttgaaaaaataggtatgaatattaccgccatagaatat gaagatacaattattgttatagattgtggcttatcatttcctgaagatgagatgttagga atagattttataattcctgatgttacttatttgaaggaaaatattgaaaaggttaaaggg tttgttattacacatggacatgaggatcatattggagccttgccttatatattaaaagat ataaatgtaccggtttatgctactaaattgacaacagcaattattgaaaataaactaaaa gatcataatctactaaaggctaccaaacgaaaagtaataaaatacggtcaatcaattaat ttgggatgttttagaattgagtttgtaagaacaaatcatagtattgcagatgctgcggca ctggctatctttacaccggcaggaattatattccacacgggggattttaagatagattat actccggtattcggtgaacctatagatcttcaaaggatcggtgaaatcggtaaaaaaggg gtattagcccttatgtgtgacagtaccaatgcagaaagatccggttatactatgtcagaa agtacagtgggcaagacctttgatagtatatttgccgattataataaacaaagaattatt gttgcaacctttgcttctaatgtagatagggttcagcagattgtaaattctgcagtaaag tatggaagaaaagtggtaatagaaggccgcagtatgattaatattgtaactaccgcttct gaactgggatatattaatataccagacggagtattgattgatatagaacacatgaagaat tatactgatgaccaattggtactgataaccacaggaagccaaggtgaatccatggcagct ctttctagaatggctgcttctattcatagaaaagtagttatcaagccgggagatgtggta atattaagctccacacctattcccggtaatgaaaagtcagtatctagggtaattaatgaa ttgtctatgaagggagcaaaggtaatataccaggatacccatgtatcaggtcatgcctgc caagaggagattaaattaatctatgcacttacaaagcccaaatatgcaattcctgtccat ggtgagtatagacacttaatccgccatgcggaagtggcacagatgatggggcttcccaag gaaaatatattcctattgtcatccggtgacgttctttctataacagaagatagtgcagca gttactgatgaggttacatcccaaggtattttggttgacggacttggaatcggtgatgtg ggtaatatagtacttcgtgaccgtcagatgctatcagaaaatggcctgttaattgtggta atatccctagaaaaaggtactaatcagatacttgcaggtcccgatatagtctctaggggc tttgtatatgtcagagaagcagaaaatcttatggaagaggcaagagagatagtagaaaaa gcactggataaatgtctaagtaaatcatataccgattggaataaaatcaagacagaaatt aaggattcactcaacgactttatctggaagaaaacgaagagaacccctatgattcttccg ataatcatggaggtttag

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