Herbinix luporum: SD1D_1632
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Entry
SD1D_1632 CDS
T04072
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hsd
Herbinix luporum
Pathway
hsd03030
DNA replication
hsd03410
Base excision repair
hsd03420
Nucleotide excision repair
hsd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SD1D_1632 (polA)
03410 Base excision repair
SD1D_1632 (polA)
03420 Nucleotide excision repair
SD1D_1632 (polA)
03440 Homologous recombination
SD1D_1632 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsd03032
]
SD1D_1632 (polA)
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_1632 (polA)
Enzymes [BR:
hsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SD1D_1632 (polA)
DNA replication proteins [BR:
hsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SD1D_1632 (polA)
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SD1D_1632 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD1D_1632 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_2
DNA_polI_exo1
HHH
HHH_5
DNA_pol_lambd_f
XPG_I
Motif
Other DBs
NCBI-ProteinID:
CUH93178
UniProt:
A0A0K8J751
LinkDB
All DBs
Position
I:complement(1737073..1739721)
Genome browser
AA seq
882 aa
AA seq
DB search
MDKKIVLIDGHSILNRAFYGLPDLTTSKGEHTNAILGFLNILYKILDEEKPGYLAVAFDT
HHPTFRHEMFTEYKGTRKATPDELRQQVPVMKEVLKAMNVTVIEKPGFEADDVLGTLAKM
AEKEGYQVSIVSGDRDLLQLASDNIKIRIPKTKRTGTEIEDYYAKDVIEKYKVTPKQFID
LKGLMGDSSDNIPGIPGVGEKTAGKLIAKYQSIENLYDHIDELSPGKTTTTIKENKELAY
LSKELATICTDCDLEFNLEEAVLGDLYNEDVYKWFKNLEFKSLISRFGSMEIDQSLEIEK
NFSVIENLSEADLVFANIKPMDNQPIGLYMIIDNNELLGVSLCFSEKKIYLIKKVGMITE
DYLTNQVEKLAKNKFSFSVIGLKNQLKYLKVSEDDLVFDPAIAAYLLNPLTDTYHYDDIA
RDYLGITIPSVEDLLGKMKLKEAMEKMPKEFTAYACYSSYVAYKAAPRLKKQLDETGMLK
LFEEIELPLIFTLYDMEVRGIRVNKEALKEYGDHLKVGIDSLEKQIYELVGETFNINSPK
QLGVILFEKLKLPFAKKTKTGYSTAADILEKLRSEHPVISMILEYRQLTKLKSTYADGLA
VFIQDDGRIHGKFHQTIAATGRISSTDPNLQNIPIRMELGRKIRKVFIPEEGYVFLDADY
SQIELRVLAHLSGDEQLIKAYKEAKDIHRITASEVFHTPFDEVTPLQRSNAKAVNFGIIY
GISSFGLGQDLNITRKEAERFIEKYFKTFPKIKNYLDRLVAEAKKEGYSTTLFGRRRPIP
ELASSNYMQRSFGERVAMNSPIQGTAADIIKIAMNRINKRLKDNNMRSRLILQVHDELLV
EAHNEEVEEVKKIMVEEMQGAASLDVPLETEVNMGYNWYEAK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagttttaatagacggacatagtattttaaacagggctttttatggc
cttccggatttgacaacttctaagggagaacataccaatgccatattaggatttttaaat
atcctatataaaattttagatgaagaaaagccggggtatttagctgtagcctttgacacc
catcacccgacttttagacatgagatgtttacggaatataaagggaccagaaaagccacc
cccgatgagctaaggcagcaggtgccggttatgaaagaagttttaaaggctatgaatgtg
actgtaatagaaaaaccgggatttgaagccgatgatgtacttggaaccttggccaagatg
gcagaaaaagaaggttatcaagtatccatagtatccggtgacagggatttattgcagctg
gccagtgataatattaaaatccgcatacctaaaaccaaacgaaccggtacggagatagag
gattattatgccaaagatgtcatagaaaaatataaggttacacctaagcaatttatagat
ttaaagggacttatgggtgattcatcagataatataccgggtatacccggtgtcggtgaa
aaaaccgcagggaaactaattgccaagtatcagtccatagaaaatctttatgaccatatt
gatgagttatctcccggtaaaacaaccacaaccataaaagaaaataaggaactggcatat
ctgtctaaagagctggccacaatttgtaccgattgtgatttagaatttaatttagaagag
gcagttttgggtgacctttataatgaggatgtctataaatggtttaaaaacctggagttt
aaaagccttatttctagatttggatcaatggagatagaccaatctttagaaatagagaaa
aatttctcggtaattgagaatctaagtgaggcagatttggtatttgcaaatattaagcct
atggataatcaacccatagggctttatatgattattgataataatgagcttctgggagtt
tccttatgctttagtgaaaagaagatatatttaattaaaaaggtcggtatgataacagaa
gattatttaactaatcaggttgaaaaacttgcaaaaaacaagttttcattttctgttatt
ggattaaaaaatcagcttaagtatttgaaggtaagtgaagatgatctggtgtttgatccg
gccattgctgcatatcttcttaatcccttgactgatacttatcactatgatgatattgcc
agggattatcttggaattactattccctctgtggaagatttgcttggaaagatgaagtta
aaagaggctatggagaaaatgcctaaggaatttaccgcatatgcctgctactcatcctat
gttgcctataaggcagcaccaagattaaaaaaacagcttgatgagaccggtatgttaaaa
ttatttgaggaaattgagctgcccttgatatttaccttatatgatatggaagtaaggggt
attagggttaataaagaagccttaaaggaatacggagatcatttgaaggtgggaattgat
tctttggagaagcagatttatgaactggtaggtgaaacttttaatattaactctccaaaa
caattaggggtaattttatttgaaaaacttaaattgccctttgctaaaaagactaagacc
ggctattccacggcagctgatattctggaaaaactaaggagtgaacatcctgtaatctcc
atgatattggaatatcgtcagctaaccaaattaaaatccacctatgccgatggcctggct
gtatttattcaagatgacggccggattcacgggaagttccatcagactatagcggcaacg
ggaagaataagtagcacagatcctaatctgcaaaacatccccattagaatggaactggga
agaaagattagaaaagtatttatccctgaggagggttatgtatttttagatgcggattac
tctcagatagagcttcgggttcttgcccatctatccggtgatgaacagttaattaaagct
tacaaagaagctaaagatatccataggattacagcctccgaggtctttcatactcctttt
gatgaggtaacccctctgcagcgaagcaatgctaaggctgtaaactttggaattatatat
ggtatcagttctttcggactgggacaggatttaaatattaccaggaaggaagcagagcgt
tttatagaaaaatattttaaaacctttcctaagattaagaattatctggacaggctggtg
gcggaggcgaaaaaagaagggtattccacaacactttttggacgtagaaggcctataccg
gagcttgcttcaagtaattatatgcagcgatcctttggggaaagggtggccatgaattca
ccgattcagggtacagccgccgatattattaagattgccatgaatcgtatcaataaaaga
ttaaaggacaataatatgcgctcccgtctgatacttcaggtccatgacgagcttttggtg
gaggctcataatgaagaagtagaagaagtcaaaaagattatggtggaagaaatgcaagga
gcggcaagtcttgatgttcccttagaaactgaagtgaatatgggatataattggtatgaa
gcaaaataa
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