Herbinix luporum: SD1D_1953
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Entry
SD1D_1953 CDS
T04072
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hsd
Herbinix luporum
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_1953 (addB)
Enzymes [BR:
hsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD1D_1953 (addB)
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SD1D_1953 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Terminase_3
Motif
Other DBs
NCBI-ProteinID:
CUH93491
UniProt:
A0A0K8J765
LinkDB
All DBs
Position
I:complement(2109773..2113183)
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AA seq
1136 aa
AA seq
DB search
MSLQLYLGSAGSGKSHQMYHNIIEESIKNPDTNYLIIVPEQFTLQTQKDMVSMHPNNGVI
NVDILSFMRFAYRIFDEVGGNDFPILEDTGKSMVIRRVVAEKRKELILFGSGVKKAGFIN
ELKSLLSEFYQYNIRPDDFEEMMEISAKKPVLKAKLHDIRTIYKGFADFMNERYITAEEI
LLVLSKVIDQSTWLKNSVICLDGFTGFTPCQNEILAKMMKLAKKVMVTVTIDPREPLIEE
KSDYGLFGLSQKTIKKLYDIALDTDTKIEEPIFVQNKKDGKVPYRFRKSPALAFLEHNLF
RYPYDRYEKEQDEISIHGAKDPESEIAFVVREIKRLIREEGYRYKDIAVVTGDIERYGRL
AKYYFTQANIPCFIDYKKEILGNPFVVFIRSATQIALEDYSYESVFAYLRSGLSNISQDE
VDLLEDYVIAFGIRGAKRYLEPFTRNLGRKKTLDLEQLNSIRERFIEELHPLYETLKNKD
NKVRDYVQALYDLGIRLNVWEKLESFNNYFKELNLPLMSKEYDQVYRIVMELYDQIVLLL
GDEHISLKEFGEVLETGLAEAKVGLIPPGMDEIVIGDTERTRLKDIRALFFVGVNEGIVP
KVIGSGGILSDVERELLTNNGIELAPTKRQQAFTEQFYIYLNVTKPQDKLYITFHRVNEE
GKSVGPSFLISKLLSYFKKLTITTYDEETDDMDYILQDEGIRYLSEGLRNSQTSEIFNEL
YYYYRNDQERRRILDLLIAGAFYVNKEKGISKEAAYLLYGDKLSGSVTRLERYAGCAFAH
FMSYGLSLEQRKEYKLAVPDIGNIFHNAIDEFSKMLDVSRYNWHTIPDEIREEWAIEAVK
KAVDDFEGSYLRSSKRNEYLIKRIERITIRTLWALCNQIRQGVFEPAGYEMAFYHIPDED
LLLRGRIDRMDLYETEDKLYVRVIDYKTGATAFDIQSIYYGLQKQLAIYLSAAIEFLSKQ
YKDKEIIPAGIFYYHIDDPIVAKSDQVDEDIYKKLKMNGLVNQDKEIIGLMDNKLKGPDG
TLRASVKSDIIPIETNKEGELSKRSSAASKKQIQALLNFVNKRLVEDKNQILEGDARLNP
YRAGERTACDYCEYKNACGFDARLPGYSYRNLAKRSVDELKEEIWGDKDVSEEKEN
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcaactttatctaggaagtgccggttcaggcaaatcccatcagatgtatcat
aatattattgaagaatctataaaaaatcccgacaccaattatcttattattgttccggag
cagtttactttgcaaacccagaaggatatggtatccatgcatccaaacaatggggttata
aatgtggatatcttgtcatttatgcgttttgcttaccggatttttgatgaagtaggaggt
aatgactttcctatattagaggataccggaaaaagcatggttatccgtagggtggtggca
gaaaaaagaaaggaactaatattatttgggtccggtgtaaaaaaagccggatttattaat
gagcttaaatcactgctgtctgaattttatcaatataatattagaccggatgattttgaa
gaaatgatggagatttcagcaaagaagccggtattaaaggcaaagctccatgatattcga
accatatataagggttttgctgattttatgaatgaacgatatataacagctgaggaaatc
ttgcttgtacttagtaaggtaattgatcaatctacttggctaaaaaacagtgtcatatgc
ctggatgggtttacgggatttactccctgtcagaatgaaatcctagccaagatgatgaaa
ttagctaaaaaggttatggttactgtaacaatcgaccctagggagcccttgatagaagaa
aaatcagactatgggctctttggactaagccaaaaaaccataaaaaagctatatgatata
gctcttgatacagatacaaaaattgaagagccaatttttgtccaaaataagaaggatggt
aaggttccttaccgcttcagaaaatccccggctctggcatttttagagcataatctcttt
cgttatccctacgatcggtatgagaaagaacaggatgagataagcatccatggtgccaag
gatcctgaaagtgaaattgcttttgtagttagggaaataaaacgtcttattagggaagag
ggatatagatataaggatattgcagtggttacaggggatatagaaagatatggcaggctt
gctaaatattattttactcaggccaatataccttgttttatagattataagaaggagatt
ctgggaaatccctttgttgtatttatccgttctgcaacccagattgccttagaagattat
agttatgaaagtgtctttgcttacttaagaagtggccttagcaatatatcccaagatgaa
gtagaccttttagaggattatgttattgcctttggaataagaggagctaaaagataccta
gagccatttaccagaaaccttggaaggaaaaagacacttgatttggaacagttaaattcc
atacgggaaagatttatagaagagctacatcccttgtatgaaactcttaaaaacaaagat
aataaggtaagggattatgtacaggctttatatgatttgggaatacgcttaaatgtatgg
gaaaagcttgagagctttaataattattttaaagaattaaatttaccccttatgtctaag
gagtatgaccaggtatatcgtatcgtaatggaactttatgaccagattgtacttcttctt
ggggatgaacatataagcttaaaggaatttggagaggtacttgaaaccggtcttgctgag
gcgaaagtaggtcttattcctccgggcatggatgagattgtaataggagatactgaacgg
accagattaaaagatattagggccttgttttttgtaggagttaatgaaggtatagttcct
aaggttattggcagtggcggtatcttatcggatgtggaaagggagctgcttactaacaat
ggaattgaactggctcccacaaagaggcagcaggcatttaccgagcagttctacatatat
cttaatgtgaccaagcctcaggataagttatatataacatttcatagggtaaatgaagaa
ggtaaatcagtaggaccttctttcctaatcagcaagctcttgtcctattttaaaaaactt
actattacaacttacgatgaagaaactgatgatatggattatatccttcaggatgaagga
ataagatatttgtctgagggacttagaaatagccaaacttctgaaatttttaatgaactg
tattattattatagaaatgaccaggaaagaagaagaatactggacctattaatagccgga
gctttttatgtcaataaagaaaaaggtatatcaaaggaagcggcatacttactttatggt
gataaattaagcggaagtgttaccagacttgagcgctatgcaggttgtgcatttgcccat
tttatgtcctatggtctgtccctagagcagcgtaaggagtataaactggctgtacctgat
ataggtaatatctttcataatgccatagatgaattttcgaaaatgctggatgtcagccga
tataattggcatacaatacctgatgaaattagagaagagtgggctatagaagcagtaaaa
aaagctgtagatgattttgagggtagctatctaagaagcagtaaaagaaatgagtactta
attaaacgaattgaaaggattaccataagaaccttatgggccttgtgtaatcagattcgc
cagggggtatttgagcctgcgggctatgagatggctttttatcatatacctgatgaggat
ttattgctgcggggaagaattgataggatggatctatatgaaacagaggataaattatat
gttagggttattgattacaaaaccggagctacggcctttgatattcagagtatatattac
ggactacaaaagcaactagcaatctatctaagtgctgccatagaatttttaagtaagcag
tataaggataaagagataattccggcaggtattttctattaccatatagatgatcccatt
gtagcaaagtctgaccaggttgatgaggatatatataagaagctgaagatgaacgggctg
gttaatcaagacaaggaaattatagggcttatggataataaattaaaggggcctgacgga
acccttagggcttctgtaaaatccgatattattccgatagagaccaataaagaaggtgag
ctgtccaaacgttcatcggcagcaagcaaaaaacagatacaagcactgcttaattttgtt
aataaaagattggttgaggataaaaaccagatactagaaggggatgccaggcttaatccc
tatagggcaggggagagaactgcctgcgattattgtgaatataaaaatgcctgtggtttt
gatgcgagacttcccggttattcatatcgcaacctggctaaaagatctgtggatgaatta
aaggaggaaatctggggagataaggatgtatccgaagagaaagaaaattag
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