Herbinix luporum: SD1D_1965
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Entry
SD1D_1965 CDS
T04072
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
hsd
Herbinix luporum
Pathway
hsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD1D_1965 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsd03019
]
SD1D_1965 (groL)
03110 Chaperones and folding catalysts [BR:
hsd03110
]
SD1D_1965 (groL)
03029 Mitochondrial biogenesis [BR:
hsd03029
]
SD1D_1965 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsd04147
]
SD1D_1965 (groL)
Enzymes [BR:
hsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SD1D_1965 (groL)
Messenger RNA biogenesis [BR:
hsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SD1D_1965 (groL)
Chaperones and folding catalysts [BR:
hsd03110
]
Heat shock proteins
HSP60 / Chaperonin
SD1D_1965 (groL)
Mitochondrial biogenesis [BR:
hsd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SD1D_1965 (groL)
Exosome [BR:
hsd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SD1D_1965 (groL)
Exosomal proteins of other body fluids (saliva and urine)
SD1D_1965 (groL)
Exosomal proteins of breast cancer cells
SD1D_1965 (groL)
Exosomal proteins of colorectal cancer cells
SD1D_1965 (groL)
Exosomal proteins of bladder cancer cells
SD1D_1965 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
CUH93503
UniProt:
A0A0K8J838
LinkDB
All DBs
Position
I:complement(2125968..2127590)
Genome browser
AA seq
540 aa
AA seq
DB search
MAKDIKYSADARKALEVGVNKLANTVKVTLGPKGRNVVLDKSFGTPLITNDGVTIAKEIE
LEDAFENMGAQILKEVATKTNDVAGDGTTTATVLAQAMISEGMKNLAAGANPIILRRGMK
KATDVAVESIVKMSSKITGKDQIARVAAISAGDDTVGQLVADAMEKVSNNGVITVEESKT
MKTELDLVEGMQFDRGYISAYMCTDMDKMEAVLEDPYILITDKKISNIQEILPLLEQVVQ
SGAKLLIIAEDVEGEALTTIVLNKLRGTFTCVAVKAPGYGDRRKAMLQDIAILTGGTVIT
EELGLDLKETTLDQLGRAKSVKVQKENTIIVDGLGEKAEIEARINQIKAQIEETTSEFDK
EKLQERLAKLSGGVAVIKVGAATETEMKESKLRLEDALAATRAAVEEGIVAGGGSAFIHA
SKEVAKLADTLEGDERTGANIILKALEAPLYCIVENAGLEGSVVTSKVKESNPGIGFNAL
TEEYVDMVEAGILDPTKVTRSALQNATSIASTLLTTEGVVVNIKSDEPAMPAGAGGMGMM
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggatattaaatatagtgctgacgcacgtaaggcccttgaggtaggagttaac
aagctggccaatacagtaaaagttactttaggtcccaagggtagaaacgttgttttagac
aaatctttcggaacacctttaattaccaatgacggtgttactatagcaaaagaaatagaa
ttagaagatgcatttgagaatatgggtgctcagattctaaaagaagtagcaacaaaaacc
aatgatgtagccggtgacggtactacaactgctactgttcttgcacaggctatgatcagt
gagggaatgaagaatctggctgcaggtgcaaatcctattattcttagaagaggaatgaag
aaagctacagatgtagcggtagagtcaatcgttaagatgagctcaaaaataacaggcaaa
gatcaaattgcaagagttgctgcaatttctgccggtgatgacactgtaggacaattagtt
gcagatgctatggaaaaagtaagcaacaacggtgttattactgttgaagaatctaagact
atgaagactgaacttgaccttgttgaaggtatgcagttcgatcgtggatatatttcagct
tatatgtgcactgatatggataagatggaagcagtacttgaagatccatatattttaatt
acagataagaagatttccaatatccaagagattcttcctctgcttgagcaagtggtacaa
tccggtgcaaaattattaatcattgctgaagatgtagaaggtgaagctcttacaacaatt
gttcttaataagttaagaggaacatttacctgtgtagctgtaaaagctcccggatacggt
gacagaagaaaagctatgcttcaggatattgctatccttacaggtggtacagtaattact
gaagagcttggtctagatttaaaagaaactactttagatcagcttggacgtgcaaaatca
gttaaggttcagaaagaaaatacaattattgttgacggcttaggcgaaaaagctgagatt
gaagctagaattaatcagattaaggctcagattgaagaaacaacttctgaatttgataaa
gaaaaattacaagaaagacttgctaaattatccggtggtgttgcagtaattaaagttggt
gcagccactgagacagagatgaaagaaagcaaacttcgtttagaggatgctttagcagct
acaagagcagctgttgaggaaggtattgttgccggcggtggctccgcatttatccatgct
tctaaagaggttgctaaattggcagataccttagaaggtgacgaaagaaccggtgcaaat
attatccttaaggcccttgaagctcctctttactgcatagttgaaaatgccggcttagaa
ggctccgtagttaccagcaaggttaaggagagcaatcctggaatcggatttaatgctttg
acagaagaatatgtagatatggtagaagcaggtatcctagatcctactaaggttacaaga
agcgccctacaaaatgcaaccagcatagcctccaccttattaactactgagggtgttgta
gtgaacataaagtctgacgaacctgctatgcccgctggcgcaggcggaatgggtatgatg
taa
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