Herbinix luporum: SD1D_2059
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Entry
SD1D_2059 CDS
T04072
Symbol
lysS
Name
(GenBank) Lysine-tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
hsd
Herbinix luporum
Pathway
hsd00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
SD1D_2059 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
hsd01007
]
SD1D_2059 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsd03016
]
SD1D_2059 (lysS)
Enzymes [BR:
hsd01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
SD1D_2059 (lysS)
Amino acid related enzymes [BR:
hsd01007
]
Aminoacyl-tRNA synthetase
Class II (A)
SD1D_2059 (lysS)
Transfer RNA biogenesis [BR:
hsd03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
SD1D_2059 (lysS)
Prokaryotic type
Other AARSs
SD1D_2059 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_bind
tRNA_anti-codon
tRNA-synt_2d
T4_neck-protein
DUF1980_C
Motif
Other DBs
NCBI-ProteinID:
CUH93595
UniProt:
A0A0K8J7R7
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All DBs
Position
I:complement(2224445..2226379)
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AA seq
644 aa
AA seq
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MADERAQMQSDQDLNELLKVRRTKLAELQSKGKDPFKIMKYDVTNHSADITTNYEEFEGK
TVSIAGRIMTKRVMGKASFCNVRDLKGDIQAYVRRDDIGEEPYAEFKKYDIGDIIGIEGE
VFKTKSGEISVKASKIVLLSKSLQILPEKFHGLKDTDLRYRQRYVDLIVNPEVRDTFIKR
SLIIREIRNYLDSRDFIEVETPVLVSNAGGAAARPFCTHHNALDQDLFLRISLELYLKRL
IVGGLERVYEIGRVFRNEGLSVRHNPEFTLLELYQAYTDYYGMMDLVEDLFRTVAQKVLG
TTKINYQGEEIDLAKPFERLTMVEAIKRYANVDFDQIKDEASAKALAKEHNIEFEDRHKR
GDIINLFFEEYVEEHLVQPTFIMDHPVEISPLASRKPDNPDYTERFELFITRREMANAFS
ELNDPLDQRTRFEAQEELRAAGDEEANETDEDFLNALEYGMPPTGGIGIGIDRFVMLLTD
SAAIRDVLLFPTMKTLNDVNKRIDVKTKASYEEKVEPEMIDFSKVKVEPLFEDCVDFDTF
SKSDFRAVKVKDCVAVPKSKKLLQFTLDDGTGTDRTILSGIHPYYEPEELIGKTLIAIVN
LPPRTMMGIDSCGMLLSAIHEEDGEEKLNLLMVDDRIPAGAKLY
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaaagagcacaaatgcaaagcgatcaggatttaaatgaactgcttaaagtt
agaagaacaaagctagctgaacttcaaagtaagggaaaagatccctttaaaataatgaaa
tacgatgtaactaatcattcggctgatattactactaattatgaagagtttgaaggaaaa
accgtgtccatagccggccgtattatgacaaaacgggttatgggtaaggcttctttttgt
aacgtcagggatttaaaaggtgatattcaagcctatgtaagaagagacgacattggtgaa
gagccctatgctgaatttaagaaatatgatattggtgatataattggtatagaaggagaa
gtgtttaaaactaaatccggagagatttccgtaaaagccagtaaaatagtccttctttca
aaaagcctgcagatacttcctgagaaattccatggactaaaagatacggaccttagatat
cgtcaaagatatgtggatttgatagtaaatcccgaggtaagggatacttttataaagaga
tctttaattatcagagaaattagaaattatcttgacagcagagattttattgaagttgaa
acaccggtactggtttctaatgccggaggagctgcagctagacctttctgcacccatcat
aatgcattagatcaagatctctttttaagaatttccttagaattatacctaaaaagactt
atcgtaggcggattagagcgtgtatatgaaattggcagagtatttcgtaatgaaggtctg
tccgttagacataatcctgaattcaccttacttgagttgtatcaggcatatacagattat
tatggaatgatggatttggttgaagatcttttccgtacggtagcacaaaaggtactaggt
accactaaaataaactatcaaggagaagaaatagatttagcaaaaccttttgagagactt
actatggttgaggctattaaaaggtatgccaatgttgactttgatcagataaaagacgaa
gcttctgctaaggctttggctaaggagcataatattgaatttgaggatagacataagaga
ggggatattattaatctcttctttgaagagtatgtggaggaacatttagttcaacctacc
tttattatggatcatcctgtagagatttctcctttggccagcagaaagcctgataatcct
gattatacagaaaggtttgagctgtttattacaagaagggaaatggccaatgccttctct
gagttaaatgatcctttggatcaaagaacaagatttgaggctcaagaagaattaagggca
gcaggagatgaagaagcaaatgagactgatgaagatttcctaaatgccttggagtatggt
atgccacctacaggaggcataggaattggtattgatcgctttgttatgttgcttactgat
tctgcagctataagggatgtattgctattccctacaatgaagacattaaatgatgtaaat
aagagaattgatgtaaaaactaaggcttcttatgaggaaaaagtagagccagagatgata
gatttttctaaggtaaaagttgaacccttatttgaggattgtgtagattttgataccttt
agtaaatcagatttccgtgcagtaaaggttaaagattgtgtggcagttcctaagtcaaag
aaacttttacagtttaccttagatgacggaacaggtacagaccgcaccattttaagcggt
attcacccatattatgagccggaagaactaattggcaagactcttattgctatcgtaaat
cttcccccaagaacaatgatgggtattgactcttgcggtatgctgcttagtgctattcac
gaagaagatggcgaagaaaagcttaatcttctgatggttgatgaccgcattccggctgga
gcaaagctttattaa
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