KEGG   Herbinix luporum: SD1D_2078
Entry
SD1D_2078         CDS       T04072                                 
Name
(GenBank) hypothetical protein
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
hsd  Herbinix luporum
Brite
KEGG Orthology (KO) [BR:hsd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hsd03016]
    SD1D_2078
Enzymes [BR:hsd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     SD1D_2078
Transfer RNA biogenesis [BR:hsd03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    SD1D_2078
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS bHLH-TF_ACT-like_plant Acb1 DUF6921
Other DBs
NCBI-ProteinID: CUH93614
UniProt: A0A0K8J846
LinkDB
Position
I:complement(2255001..2255543)
AA seq 180 aa
MRLFTAITFEDQIKDSLWEAMEKLSFNVIKGSFTAKDNLHLTLNFIGETKKIELVKEAME
EAVFAANIKSFNLSIGGFGRFSRRDGDICFIGVKREENLLGIQKELTNRLKSAGFDLENR
EYKPHITLARRVRFAGGFRDDELASLIVNLSQKVQKISLMKSEHINGRLTYTEIFHVCLP
NT seq 543 nt   +upstreamnt  +downstreamnt
ttgagactttttacagctataacttttgaggatcagattaaggattctttgtgggaagcc
atggagaaattaagttttaatgttataaaaggaagttttacagctaaagataatcttcat
cttacattgaattttataggtgaaacaaagaagattgagcttgtaaaagaagcaatggaa
gaggcggtttttgctgccaatataaagagttttaatctttcaatcggtggttttggaaga
tttagccgtagggatggagatatctgctttataggtgtaaaaagggaagagaatttactg
ggtatacaaaaggaattgacaaataggcttaagtcagcagggtttgatttggaaaacaga
gagtataagccgcatattacattggcaagaagagtaagatttgccggtggctttagggat
gatgagcttgcttctttaatagtaaatttaagtcaaaaggttcaaaaaatcagccttatg
aaatcagaacatataaacggcaggcttacttatacagagatatttcatgtatgcttgcct
tag

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