Herbinix luporum: SD1D_2223
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Entry
SD1D_2223 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hsd
Herbinix luporum
Pathway
hsd03420
Nucleotide excision repair
hsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD1D_2223
03430 Mismatch repair
SD1D_2223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_2223
Enzymes [BR:
hsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD1D_2223
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD1D_2223
MMR (mismatch excision repair)
Other MMR factors
SD1D_2223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
ResIII
AAA_11
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
CUH93738
UniProt:
A0A0K8J8Z9
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All DBs
Position
I:complement(2386064..2387899)
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AA seq
611 aa
AA seq
DB search
MMLNQAQQEAVGHKDGPMLVLAGPGSGKTLVITERTKYLINKHKISEGNILVITFTRAAS
KEMKDRFLKTMKRSKTAVNFGTFHSVFFTILKYAYNLSVNNIIKDDERINCIKSIINKMG
ISYDDEKEFIAEILSEISMVKGNRIELSSYYSSSCGDEVFRRIYQEYNKKIRQANRIDFD
DMLLLCYELLSQREDILRLWQDKFRYILIDEFQDINILQYDIIKLLAKPRNNLFIVGDDD
QSIYRFRGARPEIMLNFPKDYPNCKKIFLNINYRSGIKIIETANKLISNNKVRYEKSLKP
HKKDEARVVSCQFETMGEQNIKLVEEIYKLFKSGIPLSEMAILVRTNLGAGAIIHKLMEY
NIPFFAGDNIPNIYDHWITEDLIAYMRIAMGEDGRGLYLRIINRPKRYISRECFDTSQVN
FEDLYNYYEDKEWMIDRIDQLEYDLAMLAGMSPYAAIQYIRRAVGYEDFLKEYAKDRRLS
EEELIDVLDEIQEGTKGFDSFVEWFEYIKQYKEELKKQAQHNTNKNIDGIRIMTMHSSKG
LEFETVFIVDVNEDITPHKKALLPEDIEEERRLFYVALTRAKKYLYIFSPKKRYNKDMEP
SRFINELKGNN
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgatgttaaatcaggcgcagcaagaagccgtaggacacaaggatgggcctatgcttgtt
ttagccggtcccggttctggaaagaccttggttataactgaacgaactaaatatttaata
aataaacacaaaatttctgaaggaaatatcctagtaattacatttaccagggcagcttca
aaagaaatgaaggatcgttttctaaaaaccatgaaaagatcaaaaaccgcagtaaacttc
ggtacatttcatagtgtttttttcactatattaaaatatgcctataacttgagtgttaat
aatattatcaaggatgatgaaagaataaattgcattaagagcattattaataaaatggga
attagttatgatgatgaaaaggagtttatagctgaaatcttatctgaaattagtatggta
aaaggcaataggatagagctttcaagctattattcaagctcttgtggagatgaagttttc
agaagaatttatcaagaatataacaaaaaaattcgccaggctaaccgaattgattttgac
gatatgcttttattgtgttatgagctattatcacagagagaggatatattaaggctgtgg
caggataagtttagatatatattaattgatgaatttcaagatattaatatattacagtat
gatataataaaactgttggcaaagcctagaaacaatctatttattgtaggagatgacgat
cagtctatttacagatttcgcggtgcaaggccggaaattatgcttaatttccctaaggac
tatcctaattgcaaaaaaatatttctgaatataaattataggtcagggataaagattata
gagactgctaataaattgatttcaaataataaggttcgctatgaaaagtcattaaagccc
cataaaaaggatgaagctagggtggtaagctgccaatttgaaactatgggggagcaaaac
ataaaactggtggaggagatttataagctttttaaaagtgggatacccttgtcagaaatg
gctattttggttcgtaccaatcttggtgccggagccattattcataagctgatggagtat
aatattcccttttttgccggagataatattcctaatatctacgaccattggataaccgag
gatttaattgcgtatatgagaattgctatgggggaagacggcaggggtctgtatcttcgg
attataaacagaccaaagcgctatataagccgggaatgctttgatacatcccaggttaat
tttgaagatctttataattattatgaagataaggagtggatgatagacagaatagatcag
ctggaatatgatttggcaatgcttgcagggatgagtccttatgcagcaattcaatatatc
agaagagccgtaggatatgaggatttccttaaagaatatgcaaaggataggagattaagt
gaagaagaactaattgatgttctagatgagatacaggagggtacaaaaggatttgattct
tttgttgaatggtttgaatatattaaacagtataaggaggagcttaaaaaacaggctcaa
cataatactaataaaaatattgatggtataagaataatgaccatgcatagttctaagggg
ttggaatttgaaaccgtctttattgtggatgtcaatgaagatattactccccataaaaaa
gccctattacctgaagatattgaagaagagagaaggttattttatgttgctttaacaaga
gccaagaaatatctctatatattttcccctaaaaaacgttataacaaggatatggaaccc
tcacggtttattaatgaacttaagggaaataattaa
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