Herbinix luporum: SD1D_2309
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Entry
SD1D_2309 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K18770
penicillin-binding protein 4 [EC:
2.4.99.28
3.4.16.4
]
Organism
hsd
Herbinix luporum
Pathway
hsd00550
Peptidoglycan biosynthesis
hsd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SD1D_2309
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
hsd01003
]
SD1D_2309
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hsd01011
]
SD1D_2309
Enzymes [BR:
hsd01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
SD1D_2309
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SD1D_2309
Glycosyltransferases [BR:
hsd01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
SD1D_2309
Peptidoglycan biosynthesis and degradation proteins [BR:
hsd01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
SD1D_2309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
FKBP26_IF
Motif
Other DBs
NCBI-ProteinID:
CUH93821
UniProt:
A0A0K8J865
LinkDB
All DBs
Position
I:complement(2486048..2488042)
Genome browser
AA seq
664 aa
AA seq
DB search
MNKRRIDIAKKKKTGKWLKLIIKVFTLVILLTLAIGIFYFYNTYGKILIKLQKEAKLLVH
SSTEEIFKSSQTSLVYDNDGKLITSLKGVKDVYYIEYKDIPPVLLNAIIVTEDKKFFSHG
GIDYLANIRAAIALIKNKGEITQGASTITQQLARNVFLTHDVTYERKAKEIFIAQELEKI
YTKDQIMEFYINNIYYANGHYGILAAADGYFGKGINELSLSQIAFLCAIPNNPNLYNPVT
NLNRTIERRDRILKQMYENGKINLIDYRHAIKEPISINRQEEQKNNYVETFVYHSAIKAL
MKGEGFEFRNQFIDEEDKKAYDKAYKELYYSYQNKLYTGGYRIYTSIDLDKQKLLQESVD
KALEKFTEKNEEGIYQLQGAAVCIDNDTGRVVAIIGGRSQEYVGYTLNRAYQSYRQPGSA
IKPLIVYTPAFERGYRLDSLVIDEPIKNGPKNSGGSYVGEMKLQRAIELSKNTIAWKLFE
ELTPKLGLSYLLKMDFQKIVDDDYYLAASLGGLTIGTSPLEMTAAYGALVNDGYYREPTC
IVKITDAAGKILVDDTIDEEQVYQTGASRMVTEALTGVIKNGTAKGFELSNTISAGKTGT
TDNRRDGWFVGYTPYYTTGVWVGYDMPKPVEGLKGASYPAVIWHSYMEQIHQPGMNRSFI
KYEE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaagaatagacattgctaagaaaaagaaaaccggaaagtggcttaagctt
attattaaagtttttactttagttattttattgacactggcaataggaatattttatttc
tataacacctatgggaagattttaattaagcttcaaaaagaggcaaaattgctggttcat
tcttcaactgaagagatctttaaatcttcccagaccagcttagtatatgataatgacgga
aaattaatcactagcttaaagggagttaaggatgtctattatattgagtataaggatatt
ccaccggttctattaaatgcaattattgtaacagaggataaaaagttttttagtcatggt
gggattgattatctggcaaatatccgtgctgccatagctctgataaaaaacaaaggggaa
attacccaaggggccagtaccataactcagcagttggcaaggaatgtatttcttacccat
gatgttacctatgaaagaaaggcaaaggagatatttattgcccaagagctagaaaaaatc
tatacaaaagatcagattatggagttttatatcaataatatttattatgccaatggacat
tatgggatattggcagcagctgacggttattttggcaagggaattaatgaactaagctta
tctcagattgcatttttatgtgccatacccaataatcccaacctctataatcctgttaca
aatttaaatcggacaattgaaagaagagataggatccttaagcagatgtatgagaatggc
aaaataaatctaattgattatagacatgcaataaaggagccaatatccataaaccggcag
gaggagcaaaaaaacaattacgtagagacctttgtatatcatagtgctattaaggccttg
atgaaaggagaaggttttgaatttcgcaatcaatttatagatgaagaagataaaaaagcc
tacgataaagcctataaggaactatactatagctatcagaataaattgtataccggtggt
tatagaatctatacctcaattgatttggacaaacaaaagctactgcaagaatctgtggat
aaggccttagagaaatttaccgagaagaatgaagaggggatatatcaacttcagggggcc
gctgtatgtattgataatgatacaggaagagtggtggccataatagggggcagaagtcaa
gaatatgtaggttatactcttaatcgggcttatcaaagctataggcagcctggaagtgcc
ataaaaccattaattgtctatacccctgcttttgaaagaggttataggctagatagtctt
gtaatagatgaacctattaagaatgggcctaaaaattccgggggaagctatgtaggtgaa
atgaagcttcaaagggctattgagttatctaaaaacaccattgcctggaagttatttgag
gagctgacccctaagcttggcttatcatatcttctaaaaatggattttcagaaaatcgtt
gatgatgattattatctggcagcttccttaggagggttgaccataggaacaagtcccttg
gagatgacagctgcctatggggctttagtaaatgacggttattatagagagcctacctgt
atagtaaagattaccgatgcagcaggtaagatactggtagatgacaccatagatgaagag
caggtttatcagactggggcttctaggatggtaacagaggcattaacaggagttataaaa
aacggtacagccaaaggctttgaactttcaaatacaatcagtgcaggcaagaccggaact
accgataatagaagagacgggtggtttgtaggatatactccttattatactaccggtgtg
tgggtcggatacgatatgccaaagccagtggaaggtttaaagggagcttcctatccggca
gttatttggcatagctatatggaacagattcaccagccgggaatgaacagaagctttatt
aaatatgaagaataa
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