Herbaspirillum seropedicae SmR1: Hsero_0002
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Entry
Hsero_0002 CDS
T01268
Symbol
dnaN
Name
(GenBank) DNA polymerase III subunit beta protein
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03430
Mismatch repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_0002 (dnaN)
03430 Mismatch repair
Hsero_0002 (dnaN)
03440 Homologous recombination
Hsero_0002 (dnaN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_0002 (dnaN)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0002 (dnaN)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hsero_0002 (dnaN)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hsero_0002 (dnaN)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hsero_0002 (dnaN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta_2
DNA_pol3_beta
DNA_pol3_beta_3
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
ADJ61532
UniProt:
D8ITP1
LinkDB
All DBs
Position
2012..3118
Genome browser
AA seq
368 aa
AA seq
DB search
MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV
GSGSEATATTVAARKLLDILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPTV
AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA
FCQVETEEDFPRQEVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKLVE
GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD
QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK
YVVMPMRI
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggtgaagacccaaagagacacgctcctgcgtcctctgcagatcgtgagtggt
attgtcgagcgtcggcacacattgccgattctggccaatatcctcatccgcaaggacggc
gagaaagtgtctttcctgtccaccgacatcgaagtgcagatcaccacgcacgccgacgtc
ggctccggcagcgaggcgaccgccaccaccgtggccgcgcgcaagctgctcgatatcctg
cgcgccctgcccgattccggcgaagtgtcgatctcgctgtccaacaagcgcctgacggtg
caatcgggcaagtcccgcttcgccctgcagacgctggccgccgaggaattcccgaccgtg
gcccaggccgagcactacaacgcccaggtcaacctgccgcagaagaccttgaagcacctc
ttcaacatggtccacttcgccatggcccagcaggatatccgttactacctgaacggcctg
ctgctggtggtggaaggcaagaacgtcattgcagtggccaccgacggccaccgcctggcc
ttctgccaggtcgagaccgaagaggacttcccgcgccaggaagtcatcatcccgcgcaag
accatcatcgagctgcaacgcctgctcgacgacagcgacgaagaagtccaactgcagatc
gccaacaaccaggtcaagctgaccttcgccgatatcgaactgatctccaagctggtcgaa
ggcaagttcccagactacacccgcgtggtgcccaagggctacaagaacagcttcaccatc
agccgcgaccagctgctgcgttcgctgcaacgcgccgccatcatgaccagcgacaagttc
aagggcgtgcgctgggtgatcgctcccggcagcctgaagatcagctccaccaacgccgac
caggaagaagcggtcgaagagctggaaatcgactacggcggcgacaccgtcgacatcggt
ttcaacgtcagctacctgctcgacgtgctcaacaacctgaagaacgactacgtcaacatc
gccctgggcgatgccaactcgtcggccctgatcaccatccctgacaacgccgacttcaag
tacgtcgtcatgccgatgcggatctga
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