Herbaspirillum seropedicae SmR1: Hsero_0035
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Entry
Hsero_0035 CDS
T01268
Symbol
fecI
Name
(GenBank) RNA polymerase sigma-70 factor protein
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hsero_0035 (fecI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hse03021
]
Hsero_0035 (fecI)
Transcription machinery [BR:
hse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hsero_0035 (fecI)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
HTH_24
HTH_31
GerE
HTH_3
At4g18257_C
HTH_IclR
HTH_Crp_2
DUF2089
Xre-like-HTH
DUF977
HTH_Tnp_ISL3
HTH_17
HTH_40
Motif
Other DBs
NCBI-ProteinID:
ADJ61565
UniProt:
D8ITS4
LinkDB
All DBs
Position
complement(47614..48159)
Genome browser
AA seq
181 aa
AA seq
DB search
MQPLPALLPTCPGMPVPMSIEALYCDHHSWLKGWLQRRLGNSEQAADLAQDTFLRLLGSE
RVPSVIHEPRAYLTTVAQRLVSNLWRREKLEQAYLEALAQAPVALAPSPQEQAILLETLL
ELDQLLDELPSIVRRAFLLSQLDGLTHAQVAAALGISIPTVKRYLVKALQRCYFADISFS
A
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
ttgcagcctttgcctgcccttctgcctacttgtccagggatgccggttcccatgtctatc
gaagccctctattgcgaccaccattcctggctcaagggatggctgcaacgtcgtctcggc
aatagcgagcaggcggcggacctggcccaggacaccttcctgcggctgctgggcagcgag
cgtgtgcccagcgtgatccacgagccgcgcgcctacctgaccacggtggcgcaacggctg
gtatcgaacctgtggcgccgcgagaaactggagcaggcctacctggaggcgctggcgcag
gccccggtggcgctggcgccctcgccgcaggagcaggccatcctgctggaaaccctgctg
gagctggaccagctgctcgacgagctgccttccatcgtgcgccgcgctttcctgctctcg
cagctcgacggcctgacccacgcccaggtcgcagccgccctgggcatttccattccgacg
gtgaaacgctacctggtcaaggccttgcagcgctgctatttcgccgacatctccttcagc
gcctga
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