Herbaspirillum seropedicae SmR1: Hsero_0106
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Entry
Hsero_0106 CDS
T01268
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta protein
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hsero_0106 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hse03021
]
Hsero_0106 (rpoC)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0106 (rpoC)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hsero_0106 (rpoC)
Transcription machinery [BR:
hse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Hsero_0106 (rpoC)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Hsero_0106 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ADJ61632
UniProt:
D8ITZ1
LinkDB
All DBs
Position
120045..124286
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM
GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK
EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI
LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV
KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE
RAALLEAERASRSEFGDEEISSTESIGGGEGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtccagcaaaacgaacaattcgacgcgatc
aagatcggtctggcttcgcctgacaagatccgctcgtggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactatgagtgcctgtgcggcaaatacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtggaagtgaccctggccaaggtgcgtcgtgag
cgcatgggccacatcgagctggcgtccccgactgcccacatctggttcctgaagtcgctg
ccgtcccgtctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtgaccgatcctggcatgaccccgctgaagaagtgccagatcatg
tccgaagacgactacgccgccaagtacgaagagtacggcgacgacttcatcgccttcatg
ggcgccgaaggtatccgcgaactgctgcgctcgatcgatatcgaccgcgaagcggaaacc
ctgcgccaggaactgaaggactccaagtccgaagccaagatcaagaagtacgccaagcgc
ctgaaggtgctggaggcgttccagcgctcgggcatcaagcccgagtggatgatcatggaa
gtgctgcccgtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgatggaactgcgcgcgcctgaaatcatcacgcgcaacgaaaagcgcatgttgcag
gaagcggtggactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgtccgctgaagtcgctggccgaaatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctgtcgaccaccatcaaggccgccaagaagctg
gtggaagcgcaagagccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgcgccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacatcctgttcccgtccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactatgccacccgtgaagccatcaacggc
aagaacgaaggcatgatgttccaggacgtgtcggaagtcatccgcgcctacgacaacaag
gaagtcgagctggccacccgtatcacggtgcgtatcgtggaacacccgaaggacccggtc
accggcgaattcgtgcgtaccgtcaagcgctacgagaccaccatcggccgcgccatcctc
tccgagatcctgcccaagggcctgccgttctcggtgctgaaccgcgcgttgaagaagaag
gaaatctcgaagctgatcaacacgtccttccgcaagtgcggtctgcgtgccaccgtcgtg
tttgccgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctccatc
tgcgtggacgacatgcttgtgccgccgcaaaaggccaccctgatcgccgctgccgagtcc
gaagtcaagcagatcgaacagcagtactcctcgggtctggtgaccgcaggcgagcgctac
aacaaggtcgtggacatctggggcaaggccggcgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcatcacccgcgaaggcaagaagaccacccaggaatcgttc
aacgcgatttacatgatggccgactccggcgcccgtggttcggctgcccagatccgccag
ctggccggtatgcgcggcctgatggccaagcctgacggctccatcatcgagacgcccatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgccaactccggttacctgacccgtcgt
ctggtggacgtgacccaggatctggtcgtgatcgaagacgattgcggcacctccaacggt
tcggccatgaaggcgctggtcgaaggcggtgaagttatcgaagccctgcgcgaccgtatc
ctcggccgtgtggcggcgaccgatatcgtcaacccggaagatcaatccaccctgttcgaa
gccggcaccctgctggacgaagacaaggtcgaagagatcgaacgcatgggtatcgacgaa
gtgaaggtccgtactccgctgacctgcgacacccgctatggcctgtgcgccaagtgctat
ggccgcgacctgggccgtggcctgctggtgaactccggcgaagccgtcggcgtggtggca
gcgcagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcagcggtggcctcctcggtggaagccaagtccaacggcaccgtgcgc
ttcaccgccacgatgcgttacgtgaccaatggcaagggcgagcagatcgtcatttcccgt
tccggcgaagtgctgatcaccgatgacctgggccgtgagcgcgagcgtcacaaagtgccg
tacggcgccaccctgatcgtcaaggatggcctgaccatcaaggccggtaccgccctggcg
acctgggatccgctgacccgtccgatcatcaccgagtactccggtaccgtgaagttcgaa
aacgtggaagaaggctccaccgtggccaagcagatcgacgaagtcaccggtctgtcgacc
ctggtggtcatcgatgcgaagcgtcgtggtccgtcctccaaggtcatgcgtccgcaggtg
aaactgctgaacgaacaaggcgaagaagtgaagatcgccggcaccgaacactcggtgacc
atcggcttccaggtcggcgcgctgatcaccgtcaaggacggccagcaagtgcatgtgggt
gaagtgctggcccgtatcccgaccgaatcgcagaagacccgtgacattaccggtggtctg
ccgcgcgtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctggccgaa
gtcactggtaccgttgccttcggcaaggaaaccaagggcaagcagcgtctggaaatcacc
gacatggaaggcaccaagcacgagttcctgatcaccaaggacaagcaagtgctggtgcac
gacggccaggtggtgaacaagggcgaaatgatcgtggacggtccggctgacccgcaggac
atcctgcgcctgttgggtatcgaagcgctggcacgttacatcgtcgacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcaagtggtggagccgggcgacaccaactacatcaccggtgagcag
gtcgagcgttccgaactgctggacgagaacgaccgcgtgaccgccgaaggcaagatcccg
gcgacctacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagccgcgatcatgggc
aagaaggacggcctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatcccggct
ggtactggcctggccttccaccgcgcccgcaaggaaaaggatgcatgggaagccgaagag
cgcgcagcactgctcgaagccgaacgtgcctcccgctccgaattcggcgacgaggaaatc
tcctcgaccgaatccatcggtggcggcgaaggcgaagcgtaa
DBGET
integrated database retrieval system
