Herbaspirillum seropedicae SmR1: Hsero_0140
Help
Entry
Hsero_0140 CDS
T01268
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha chain protein
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hsero_0140 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hse03021
]
Hsero_0140 (rpoA)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0140 (rpoA)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hsero_0140 (rpoA)
Transcription machinery [BR:
hse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Hsero_0140 (rpoA)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Hsero_0140 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ADJ61666
UniProt:
D8IUU7
LinkDB
All DBs
Position
146046..147023
Genome browser
AA seq
325 aa
AA seq
DB search
MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG
VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL
INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS
YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP
SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI
KEVLASRGLTLGMKLENWPPAGLEK
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagtttgttgaagccccgcatcatcgaagtggaaaccctggcccccggtcac
gcaaaggtcgtgatggagccgttcgagcgtggttatggtcacaccctgggcaacgcgctg
cgtcgcgtgctgctgtcgaccatgagcggttacgctcccaccgaagtgaccatcgctggt
gtggtgcacgaatactcgtccctggacggcgtgcaggaagacgtcgtggacatcctgctg
aacctcaagggcgtggtcttcaagctgcacaaccgtgacgaagtcaccctgaccctgaag
aaggaaggcgaaggcgccgtcctggcttccgatatcgatctgccgcacgacgtcgaactg
atcaacccggatcacgtcatcgccaacctgaccggtggcggcaagctggacatgcagatc
aaggtcgaaaagggccgtggctatgtgcccggtaacgtgcgtcgtctgtccgaagacacc
aacaagaccatcggccgcatcattctggatgcctcgttctcgccggtgcgtcgcgtgtcc
tacgcggtcgaatccgcgcgtgtggaacagcgtaccgacctggacaagctggtcatgaac
atcgagaccaacggcgtcatcaccccggaagaagcgattcgccagtcggctcgtgtgctg
gtcgatcagctcaacgtgttcgctgccctggaaggcaccgaagcgactgcagaagcaccg
tcgcgcgcaccgcaggtcgatcctatcctgctgcgtccggtcgacgacctggagttgacc
gtccgttcggcaaactgcctgaaggccgagaacatctactacatcggcgacctgatccag
cgcagcgaaaacgaactgctgaagaccccgaacctgggtcgcaagtcgctgaacgaaatc
aaggaagtcctggcttcccgtggcctgaccctgggcatgaagctggaaaactggccgccg
gccggtctggaaaagtaa
DBGET
integrated database retrieval system
