Herbaspirillum seropedicae SmR1: Hsero_0338
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Entry
Hsero_0338 CDS
T01268
Symbol
ddlB
Name
(GenBank) D-alanine-D-alanine ligase B protein
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00470
D-Amino acid metabolism
hse00550
Peptidoglycan biosynthesis
hse01100
Metabolic pathways
hse01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hsero_0338 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Hsero_0338 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Hsero_0338 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hse01011
]
Hsero_0338 (ddlB)
Enzymes [BR:
hse01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Hsero_0338 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
hse01011
]
Precursor biosynthesis
Amino acid ligase
Hsero_0338 (ddlB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp
TTL
CPSase_L_D2
Motif
Other DBs
NCBI-ProteinID:
ADJ61864
UniProt:
D8IW66
LinkDB
All DBs
Position
373524..374528
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AA seq
334 aa
AA seq
DB search
MISQDQIKAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQA
EQFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTP
RFLTLDAQATTREQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCARYDK
VVLAEEFIRGRELTVPVLGTGSAARALPVIEIRAPEGNYDYQNKYFTDDTKYLCPAPLDE
ELTRHLQNLAVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAK
AVGMSYEDLCCEILQMAALDMTPSKDWTPQAGQS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgatcagccaggaccagatcaaggcctttggccgcgtcggcgtgctcttcggtggccgt
tcggccgagcgcgaagtgtcgatgatgtcgggcaacggtgtcttgcaggccttgcgcagc
aagggcgtggacgcccatcccttcgatccggccgagcgcagcctgggtgagttgcaggcc
gagcagttcgatcgcgtcttcatcgccctgcatggccgctatggcgaggacggcaccttg
caaggcgcgctggaacagatgggcctgccctacacgggaccgggcgtgatgtcttccagc
atcgccatggacaaggtcatgaccaagcgcatctggctctcgcatgggctgcccacgccg
cgcttcctgactctggacgcccaggcgaccacccgcgaacagctgcgcctggtgcccgat
acgctgggcctgccgctgatgctcaaggcgccgcacgagggctccaccatcggcatcgcc
aaggtcaacggctattcggacatgcaggaaggcttcgacctctgcgctcgctacgacaag
gtggtgctggccgaggagttcatccgtggccgcgaactgacggtgccggtgctgggcacg
ggcagcgctgcacgcgccttgccggtcatcgagatccgggcaccggagggtaactatgat
taccagaacaagtatttcaccgacgacacgaaatatttgtgtccggccccgctggatgag
gaactgacgcgccatctgcagaatctggcggtacaggccttcaatgccttgggttgccgt
ggctggagccgtgtcgacttcatgttgcgcgaagtcgatggcaaggccgagccctacctg
ctggaaatcaacacctcccccggcatgaccggccattcgctggtgccgatggcggccaag
gcggtgggcatgagctacgaggatctgtgttgcgagatcttgcagatggcggcgctggac
atgacgccttccaaggattggacgccgcaggcgggccagtcgtga
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