Herbaspirillum seropedicae SmR1: Hsero_0399
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Entry
Hsero_0399 CDS
T01268
Symbol
vacB
Name
(GenBank) exoribonuclease R protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hse03016
]
Hsero_0399 (vacB)
Enzymes [BR:
hse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hsero_0399 (vacB)
Transfer RNA biogenesis [BR:
hse03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Hsero_0399 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ADJ61924
UniProt:
D8IX49
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All DBs
Position
433147..435201
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AA seq
684 aa
AA seq
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MNLLFEESGDFKAGSIMTQQGESYQVEMASGKRAKVKARDALLQFATPAPQELLQQAQAI
AEEIDLDFLWEVAGEEEFGFTELATDYFGHAPLPPEAAGLLLRLHNAPIYFYKKGRGRYK
AAPQASLQAALAGLEKKKQQLLAQAAYVDELKAHKLPQAFAPIALQLLFKPDKNSIEFKA
LDAAAKEMQTTPQRLMLAAGGVASPKDLHYARFLFEHFPRGTGFPAIDIPAPPTDLPTAD
VQAFSIDDVTTTEIDDALSVTRLPDGKLRVGIHIAAPGLAIKRGDAIDAIARARMSTVYM
PGEKITMLPDELVAAYTLDAGAARPALSLYATLDATNWAVLATETRAELVPITANLRHND
LDELVTEEALAENRGEYPHKDEIALLWQWVQLLEQGRMAKRESFGLRPEQNNRVDFNFYV
EDDVVSIVRRRRGAPLDKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAGGWAAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACIEHGVTAPLVAPFKPRDADLF
AIVSGFDAAYSGYADFQSTMERYWCLRWLAQENARVVDAVVLKDEILRLVDIPLVLRMPG
LPQLARGLQVKLDLLRWDEVDLTVEARLLEVPAAAAQAVDADLGEEDEDLLEGMAALGEE
EAPPPEEPAASLAADENPPAEAAQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaatttactgttcgaagaatccggcgatttcaaggccggctccatcatgacccagcag
ggcgagtcctaccaggtcgagatggcctccggcaagcgcgccaaggtcaaggcgcgcgac
gcactgctgcagttcgcgaccccggcgccgcaggaactgctgcaacaggcccaggccatc
gccgaggagatcgacctggacttcctctgggaagtggccggcgaggaagaattcggcttc
accgaactggctaccgactacttcggccatgccccgctgccgcccgaggcggccggcctg
ctgttgcgcctgcacaatgcgccgatctacttctacaagaagggccgcggccgctacaag
gccgccccgcaagcctcgctgcaggccgcgctggccggactggaaaagaagaagcagcaa
ctgctggcgcaagcggcctatgtggacgaactcaaggcccacaagctgccgcaggcgttt
gccccgatcgcgctgcaactgctgttcaagcccgacaagaacagcatcgaattcaaggcc
ctggacgccgccgccaaggaaatgcagaccacgccgcagcgcctgatgctggccgccggc
ggtgtcgcttcgcccaaggatctgcactatgcgcgcttcctgttcgagcatttcccccgt
ggcaccggtttccccgccatcgatattcctgcgccgcccacggacctgcccacggccgac
gtgcaggccttctccatcgacgacgtcaccaccaccgagatcgacgacgcgctgtcggtc
acgcgcctgcctgacggcaagctgcgcgtgggcatccacatcgccgccccgggcctggcc
atcaagcgcggcgacgccatcgatgcgattgcccgtgcgcgcatgtccaccgtctatatg
ccgggcgaaaagatcaccatgctgcctgacgagctggtggccgcctataccctggacgcc
ggcgcggcgcggccggccctctcgctctacgctacgctggacgccaccaactgggccgtg
ctggccaccgagacccgtgccgaactggtgccgatcacggccaacctgcgccacaacgat
ctcgacgagctggtcaccgaggaagcgctggccgagaatcgcggcgagtatccgcacaag
gatgagatcgcgctgctgtggcaatgggtgcaattgctggagcagggccgcatggccaag
cgcgagagcttcggcctgcggccggaacagaacaatcgcgtggacttcaacttctacgtc
gaggacgacgtggtcagcatcgtgcgccgccgtcgcggtgcgccgctggacaagatcgtg
gccgaactgatgatcttcgccaacagcacctggggcaagctcatggccgaccatggcgtg
cccggcatctaccgcgcccagggtggcggcgccggcggctgggccgccaagatgcaggtg
cgcatggtgacccacgccgcgccccaccagggcctgggggtggatcaatacgcctggagc
acctcgccgctgcggcgctacaccgacctggtcaaccagtggcagatcctggcctgcatc
gagcatggcgtgacggcgccgctggtggcgcccttcaagccgcgcgatgccgacctcttc
gccatcgtctccggcttcgacgccgcctattccggctatgccgacttccagtccaccatg
gaacgctactggtgcctgcgctggctggcccaggaaaacgcccgtgtggtcgacgccgtg
gtgttgaaggacgagatcctgcgcctggtcgatatccccctggtgttgcgcatgccgggc
ctgccgcagctggcgcgcggcctgcaggtcaagctggacctgctgcgctgggacgaggtc
gacctgaccgtggaggcgcgcctgctggaagtgccggccgccgctgcccaggccgtggac
gccgacctgggcgaggaggacgaagacctgctcgaagggatggcggcgctgggcgaggaa
gaggccccgccgccagaggagccggcggcgtcgctggcagccgatgagaacccgcccgct
gaagcggcccaatga
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