Herbaspirillum seropedicae SmR1: Hsero_0454
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Entry
Hsero_0454 CDS
T01268
Symbol
polA
Name
(GenBank) DNA polymerase I protein
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03410
Base excision repair
hse03420
Nucleotide excision repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_0454 (polA)
03410 Base excision repair
Hsero_0454 (polA)
03420 Nucleotide excision repair
Hsero_0454 (polA)
03440 Homologous recombination
Hsero_0454 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_0454 (polA)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0454 (polA)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hsero_0454 (polA)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hsero_0454 (polA)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Hsero_0454 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hsero_0454 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ADJ61979
UniProt:
D8IXA4
LinkDB
All DBs
Position
493121..495883
Genome browser
AA seq
920 aa
AA seq
DB search
MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA
KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ
ATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIG
DTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKISGVVGENLRRALDWLPQGRVLVT
VKTDCDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGASKAPMVGA
SAAAALEAPAQGGLFAAAPKVEYETVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAE
LVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDASKPKLGQHLKYDSHI
FANYGVRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNE
VAIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLID
SERLGQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPS
TDEEVLQKLAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGR
LSSNDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFA
NNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYI
DKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPM
QGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELMKNVA
ELKVPLLAEVGIGKNWDEAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccttgttgttagttgatggttccagttacctctatcgtgccttccatgca
ttgcccgatatgcgtaacgcggaaggcgcgcccaccggtgcgctgtacggcatcatcaat
atgctgcgccgactgcgcaacgattatcccgcaagttacgttgcctgtgtgttcgacgcc
aagggcaagactttccgtgatgatctgtaccccgactacaaggccacccgcaagtccatg
ccggaagacctggccctgcagatcgagcccatccatgccgccgtgcgcgcgctgggctgg
ccgatcctgatggtcgagggcatcgaggccgacgacgtcatcggcacgctctcggtccag
gccaccgccgccggactggacaccatcgtctccaccggcgacaaggacatggcccagttg
gtcaatgaacacgttaccttggtcaacacgatgagcaatgaagttctcgacattgccggc
gtgactgcaaaattcggcgtgccgcccgagcgcatcgtcgattacctgagcctgatcggc
gataccgtggacaacgtgcccggcgtcgagaagtgcggtcccaagaccgccgtgaagtgg
ctcaccgcctatggcaccctcgatggcgtcatggccaatgccgacaagatcagcggcgtg
gtcggcgagaacttgcgccgtgcgctcgactggctgccgcaaggccgcgtgctggtgacc
gtcaagaccgattgcgatctgtccgcgcacatgagctccatccttgaatcgctgaccatg
cagccgcaggacaaggatgtgctcaaggaactcttcacccgctacaacttccgcacctgg
ctgcgcgaactcagcgatggcgccgaggcgggcgcatcgaaggctcccatggtgggagct
tcagcagcggccgcgctggaagcgccggcgcaaggcggcctcttcgcggccgcgcccaag
gtcgagtacgagactgtgctcaccgatgcgcaactggaccagtggatcgccaccatcaac
gccgcagaactcaccgccgtcgataccgagaccacctcgctggaagcgatgcaggccgag
ctggtcggcatctccctgtgctgcgagccgggccgtgctgcctatatcccggtggcgcac
aactaccaggatgccccggtgcaactgtcgcgccagcacgtgctggagaaactcaagccc
tggttggaagacgccagcaagcccaagctcggccagcacctgaagtacgacagccacatc
ttcgccaactatggcgtccgccttgccggtgtgaagcacgatacgctgctggagtcctat
gtcttcgagtcgcatcgtccgcatgacatggacagcctggccgcgcgccacctggagcgc
aagaccatcacctatgccgaggtctgcggcaagggcgcctcccagatcggcttcaatgaa
gtggctatcgagcgcgccaccgaatacgctgccgaagacgccgaggtcacgctggccctg
caccaggccatgtggccgcagatcgaacatgatgacaagctgcgcttcatctacgagaag
atcgaagtccccacctcggtggtgctgcagaagatcgagcgtaacggcgtgctgatcgat
agcgagcgcctgggccagcaatcgcatgacctgggcaaacgcatgctggagatcgaacag
caggcctacgacctggccggtcagcccttcaacctgaattcgcccaagcagctgggcgag
atcctgttcggcaagctggaactgccggtggtcaagaagaccgcttccggcgcgccgtcc
accgatgaagaagtgctgcagaagctggccgaggattatccgctgcccaaggtgttgctg
gactatcggggcctggccaagctcaagtccacctataccgacaagctgcccaagatggtc
aacccggccactggccgcgtgcataccaactatgcgcaggccgtggcggtgacggggcgc
ttgtcctccaatgatcccaacctgcagaacatccccatccgcaccgccgaaggccgtcgc
atccgcgaagccttcgtcgcgcccgaaggcagcgtgatcgtctcggccgactattcgcag
atcgagctgcgcatcatggcgcacatctcggaagacgagaacatgttgaaggcctttgcc
aacaacgaagacatccaccgcgccaccgccgccgagatcttcggcatcgcgcccgagcag
gtagagtccgagcagcgccgctacgccaaggtcatcaacttcgggctgatctatggcatg
agcgccttcggcctggccagcaacctgggcatcgagcgtgcggctgcgcagatgtatatc
gacaagtacttcatgcgcttctcgggcgtgaagcgctacatggatgagacacgcctgcag
gccaaggcgcgcggctatgtggaaaccgtcttcggtcgccgcctgtggctgcccgagatc
aattcgcccaacggtccgcgccgccagggcgccgagcgggcggcgatcaatgcgcccatg
caaggcactgccgccgacctgatcaagatggccatgattgccgtgcaggactggctggaa
acgaacagtctgcagacccgcatgatcatgcaggtgcatgacgaactggtgctggaagtg
ccgcagcaagagctggagatggtgcgtgaaaagctgcctgaattgatgaaaaatgttgcg
gagctgaaagttcccttgcttgccgaggtgggaatcggtaagaattgggacgaagcacac
taa
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