Herbaspirillum seropedicae SmR1: Hsero_0494
Help
Entry
Hsero_0494 CDS
T01268
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsero_0494 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hse03019
]
Hsero_0494 (recQ)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_0494 (recQ)
Enzymes [BR:
hse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hsero_0494 (recQ)
Messenger RNA biogenesis [BR:
hse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hsero_0494 (recQ)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hsero_0494 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADJ62014
UniProt:
D8IXD9
LinkDB
All DBs
Position
538028..539884
Genome browser
AA seq
618 aa
AA seq
DB search
MVDFDSLPADAPPQERALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLC
YQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDL
DLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPQVP
RIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHP
EDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFLREDKIVMVATIA
FGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDES
DADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEKSAPCGNCDTCLTPPVSFDATVE
VQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQ
VIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSSQRSSFVETDLST
EEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLET
YGAQIIALIAEMQAAQSS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacttcgattccctgcccgccgacgcccctccgcaagaacgcgctctgcacgtg
ctggagacggtgttcggctattcctccttccgtggccaccagggtgagatcgtccagcac
gtcgccggcggcggtgacgccctggtgctcatgcccaccggcggcggcaagtcgctgtgc
taccaggtcccggccctgctgcggcaagggaccggcgtggtgatctcgccgctgatcgcg
ctgatgcaggatcaggtcgacgccctcgatgaagtgggcgtgcgcgccgccttcctcaat
tccacccagagcttcgacgaagccatgcagatcgaacgtcgcctgcgccagggcgacctt
gacctgctctacgtcgcccccgagcgcctgatgacgccgcgctgcctggacctgctggag
tcggcgcgcatttcgctcttcgccatcgacgaagcgcactgcgtctcgcagtggggccac
gatttccgccccgaatacatcaagctgtcggtgctgcacgagcgcttcccgcaggtgccg
cgcatcgccctgaccgccacggccgaccagcagacccgcgaagagatcatccatcgcctg
cagctggaagatgcgcgccagttcgtctcgtccttcgaccgtcccaacatccgctaccag
atcgtcgaaaaggccaatggccgcaagcagctgctggacttcatcaagagcgagcatccc
gaagacgccggcatcgtctattgcctctcccgcaagaaggtcgaggagaccgccgacttc
ctgcgcagtgaaggcatcaatgcgctcgcctatcacgccggcatggactacgcccagcgc
accgccaaccaggcgcgcttcctgcgggaagacaagatcgtgatggtcgccaccatcgcc
ttcggcatgggcatcgacaagcccgacgtgcgtttcgtctgccatctcgacctgcccaag
agcgttgaaggctattaccaggagaccggccgcgccggtcgcgacggcctgcccgccgat
gcctggatggcctatggcctgcaggacgtggtgcaacagcgccgcatgatcgacgaatcc
gacgccgacgagaccttcaagcgcgtcctcggcaccaagctcaacgccatgctggccctg
tgcgaaaccctgcattgccggcgcgtccatctgctggattatttcggcgagaagtccgcc
ccctgcggcaattgcgacacctgcctcaccccgccggtctccttcgatgccaccgtcgaa
gtgcagaagctgctctccaccgtctaccgggtcgaacagcgcttcgcccccggccatgtg
atcgaggttctgcgcggcatcgacggcgagcgcgtcaagcaatggcggcatgaccagctt
tccgtcttcggggtcggcagcgatcgtggcgaagccgaatggcgcgccatcctgcgccag
gtgatcgcgctgggcctgctgacagtggacgccgacaactacagcgccttgaagctcacc
gaagccgcccgcccggtcctgcgcggcgagcaggccgtgcagctgcgtcgctaccagaag
cccgagaaggccaagcgcagttcgcagcgctccagcttcgtcgagaccgatctgtcgacc
gaagagcaggccctgttcgaaaagctgcgctggtggcgcgtggaaaccgcgcgcgcccac
aacgtcccggcctacgtcatcttccacgacgccaccatgcgcgagatcgccaaggcacgc
ccgcagtcgctggacgacctgcgccacgtcaccggcgtgggcgagaagaagctggagacc
tatggcgcccagatcatcgccctgattgccgagatgcaggccgcgcagtcctcgtag
DBGET
integrated database retrieval system
