Herbaspirillum seropedicae SmR1: Hsero_0723
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Entry
Hsero_0723 CDS
T01268
Symbol
miaB
Name
(GenBank) tRNA modifying 2-methylthioadenine synthetase protein
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hse03016
]
Hsero_0723 (miaB)
Enzymes [BR:
hse01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
Hsero_0723 (miaB)
Transfer RNA biogenesis [BR:
hse03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
Hsero_0723 (miaB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TRAM_2
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ADJ62242
UniProt:
D8IZC2
LinkDB
All DBs
Position
complement(789224..790564)
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AA seq
446 aa
AA seq
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MQKKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVF
SDLGRLRALKKNNPALLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMISERRY
SGRPQVDISFPEIEKFDHLPPARVEGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFED
VLTEVAGLADQGVKEIMLLGQNVNAYRGVMEDGEIADFALLIEYIAELPGIERIRFVTSH
PKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIRRMRKVRPDI
TVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSARPGTPAANLPDDTPQEVKLA
RLQRLQAALNDNAARISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVNFDGGPNGQR
LIGQIIEVSITEAFPFSLRGEIVTQH
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaagtattcatcaaaaccttcggctgccagatgaacgagtacgactcggac
aagatggctgacgtgctcaatgcctccgatggcctgatcaagaccgaccgcccggaagag
gcggacgtgatcttgctcaacacctgttccatccgcgaaaaggcgcaggaaaaggtgttt
tccgacctgggccggctgcgcgcgctgaagaagaacaatcccgcgctgttgatcggcgtg
ggcggctgcgtggcttcgcaggaaggcgaggccatcatcaagcgcgcgcctttcgtggac
atggtgttcggcccgcagaccctgcaccgcttgccgcagatgatttcggagcggcgctac
agtggtcgcccgcaagtcgatatcagcttccccgagatcgagaaattcgaccacctgccg
ccggcgcgcgtggaaggggccacggcctatgtctccatcatggaaggttgcagcaagtat
tgcagctattgcgtggtgccttacacccgcggcgaggaagtctcgcgccgcttcgaggat
gtgctgaccgaagtggccgggttggccgatcagggggtcaaggaaatcatgctgctgggc
cagaacgtcaacgcctatcgcggtgtgatggaagatggcgagattgccgacttcgcgctg
ttgatcgaatacatcgccgagctgcccggcatcgagcgcatccgcttcgtgaccagccat
cccaaggaattctcgcagcgcctgatcgacacctacgccaaggtgcccaagctgtgcaac
cacctctacctgcccgcgcaacacggctcggaccgcacgctggcggccatgaagcgcggc
tatacggcgctggaatacaagtcggtgatccgccgcatgcgcaaggtgcgtccggatatc
acggtgcagtcggacttcatcgtcggcttccctggcgagaccgaggaagatttcgaggcg
ctcatgaagctggtggccgatgtgggctttgacaacagtttctccttcatcttcagcgcg
cgtcctggcacgccggcggccaacctgccggacgacaccccgcaggaagtcaagctggcc
cgcctgcagcgcctgcaggccgcgctcaacgacaatgccgccaggatcagtgcggcccag
gtcgggaccgtgcagcgtgtgctggtggaaggcgtctccaagcgccgcgagcatgaactg
cagggccgtaccgaaagcaatcgcgtggtcaacttcgatggcggcccgaacggccagcgc
ctgatcggacagatcatcgaggtcagcatcaccgaagccttccccttctcgctgcgcggc
gagatcgtgacccagcattga
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