Herbaspirillum seropedicae SmR1: Hsero_0859
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Entry
Hsero_0859 CDS
T01268
Symbol
rho
Name
(GenBank) transcription termination factor Rho protein
KO
K03628
transcription termination factor Rho
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsero_0859 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hse03021
]
Hsero_0859 (rho)
03019 Messenger RNA biogenesis [BR:
hse03019
]
Hsero_0859 (rho)
Transcription machinery [BR:
hse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Hsero_0859 (rho)
Messenger RNA biogenesis [BR:
hse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Hsero_0859 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
Phostensin_N
S1CSD-TOTE-2
FtsK_SpoIIIE
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADJ62377
UniProt:
D8J040
LinkDB
All DBs
Position
complement(949021..950283)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP
KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttatcagaactaaaagcgatgcacgtctctgccttgctggaaatggcaatcagc
ctggacatcgagaatgctgcgcgcctgcgcaaacaggagctgatgtttgccatcctgaag
aagcgcgcaaaatcaggagaacagatttttggcgatggcgccctcgaagtgttgcctgac
ggcttcggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatctac
atctcgccttcgcagatccgccgtttcaacctgcataccggcgactccatcgaaggtgaa
gtgcgcacgcccaaggatggcgagcgctatttcgccctggtcaaggtcgacaaggtcaac
ggcgaaccgccggaagcctccaagcaccgcatcctgtttgaaaacctcacgccgctgcat
cccaacaagctcttgcagcttgagcgcgacatgcgcggcgaggaaaacatcaccggccgc
atcatcgacctgatcgccccggtcggccgcggccagcgcggcctgctggtggcttcgccc
aagtcgggcaagtcggtgatgctgcaacacatcgcccacgccatcaccaccaatcatccg
gacaccgtgatgatcgtgctgctgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgctcggtgcgcggcgaagtggtcgcctccaccttcgacgaaccggccacccgtcacgtc
caggtcgccgaaatggtgctggaaaaggccaagcgcttagtcgaaatgaagaaggacgtg
gtcatcctgctggactcgatcacccgtctggcgcgcgcctacaacaccgtgatcccggcc
tccggcaaggtgttgaccggcggtgtggacgccaacgcgctgcaacgccccaagcgcttc
ttcggtgcggcccgtaacgtcgaagaaggcggctcgctgaccatcatcgccacggccctg
atcgaaaccggctcgcgcatggatgacgtgatctacgaagaattcaagggcaccggcaac
atggaagtgcatctggaacgccgcctggccgagaagcgtgtctaccccgccatcaacctc
tccaagtccggcacccgccgcgaagagctgctgatcaagccggaccagctgcagaagatc
tgggtgctgcgcaagctcatgtacgacatggatgagatcgaggcgatggaattcatcctc
gacaagatgaagtccaccaagaacaacgccgagttcttcgacatgatgcgtcgcggcaac
taa
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