Herbaspirillum seropedicae SmR1: Hsero_0870
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Entry
Hsero_0870 CDS
T01268
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor transcription regulator protein
KO
K03086
RNA polymerase primary sigma factor
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hsero_0870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hse03021
]
Hsero_0870 (rpoD)
Transcription machinery [BR:
hse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hsero_0870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ADJ62388
UniProt:
D8J051
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Position
965140..967692
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AA seq
850 aa
AA seq
DB search
MANAMKKPAKTPAASTKSSKTVTAAKPTAAARPTKAVAAKSPVKGTAKAADTVKTTAKTA
AAATPKKTAVKTTAAKPARAAAPKATATPANKLPQAAEQAVSVKATKTSVTTKKPETKTA
KTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPES
DEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIK
LGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANV
ASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDM
IQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAASSDSDEDDEDEE
EEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKP
YVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIK
VFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLQDLRAINKK
MGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLA
IKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVV
KDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
DKLKSFLEGN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgcaatgaagaaacccgcgaaaactccagcagcgtcgacaaagagcagcaag
acggtgacggcggcaaaaccgaccgccgccgccaggcccaccaaggcggtggccgccaaa
tcgccagtcaaggggacagcgaaggcagccgataccgtaaaaaccacggcaaagactgca
gcagcagcgacgccgaaaaagacggcagtcaagacaactgccgccaagccggcccgcgcc
gcagcgcccaaggcgactgcaacgccagccaacaagttacctcaagccgccgaacaagcg
gtttctgtgaaagcgacgaagacttccgtgaccaccaagaaacccgaaaccaagaccgcc
aagaccaccaaagcagcaaaggtcgaaggcaaggacgtcagcgcgactgccgcgtcgagc
gtaagccaaaccactgatgccgctgccctggcagccatcgacacttccggctatgtgctg
cccagcgtcaaggtgccgggccgccgtggccgcaagcccaaagaattccagcccgagagc
gacgaagtggcagcgctcaacaccatcgagcgtactgagttgaaggcggccgacaaggcc
aaggccaaggaccgcaaggccaaggaaaaggccttgctgaaagacgccttctcctccgac
accgaagccagcgaagaagagctggaacgccgtcgccagaagctcaagaccctgatcaag
ctcggcaaggagcgtggtttcctgaccttctcggaaatcaacgatcacctgcccgagaac
atcgtcgatcccgaagccatcgaaggcatcatcggcaccttcagcgacatgggcatctcg
gtctacgagcatgccccagacgctgaaaccctgctgctgtcggacaacgtggccaacgtc
gccagcgatgacgacgccgaggccgctgccgaagccgcgctgtcgaccgtggactccgat
ttcggccgcaccaccgaccccgtgcgcatgtacatgcgcgaaatgggctcggtcgaactg
ctgacccgcgaaggcgaaatcgagatcgccaagcgtatcgaagatggcttgaaggacatg
atccaggccatctccgcctgcccgaccacgatcgccgagatcctggccgcggccgagcgt
atctccaaggacgagatcaaggtcgacgagatcgtcgacggcctggtcgatcccaacgag
agcgagcaacaggtcgaggctgcctcttccgactccgatgaagacgacgaggacgaagaa
gaagaggaagaagacgaagaagaagaggaaagcgagagcaccggctctggcgccgccggc
ttctccgccgaacagctggaacagttgaagcgcgacgcgctgggcaagttcgccgtcatc
ggcacccagttcgagaacatgcgtaaggccttcgagaaggaaggctacaactccaagccc
tacgtcaaggcgcaggaaatcatttccaacgagctgctgggcatccgcttcaccgccaag
atcgtcgagaagctgtgcgacaccctgcgtgcccaggtggacgaagtgcgcaccgtggaa
cgccagatcctggacgtggccgtcaacaagtgcaacatgccgcgcgcgcacttcatcaag
gtgttcccgggcaatgaagtgaacctggactgggtggacggcgaagtggcggccaaccat
gactacagcgccgtgctgagccgcaacgtgccggccatcaaggaactgcagcagaagctg
atcgacctgcaggcccgcgtggtgctgccgctgcaagacctgcgcgcgatcaacaagaag
atgggcgccggcgagaagaaggcgcgcatggccaagcgtgaaatgaccgaggccaacctg
cgtctggtgatctcgatcgccaagaagtacaccaaccgtggcctgcagttcctggacctg
atccaggaaggcaacatcggtctgatgaaggcagtggacaagttcgaatatcgtcgcggc
tacaagttctcgacctatgcgacctggtggatccgtcaggccatcacccgctccatcgct
gaccaggcgcgcaccatccgtattccggtgcacatgatcgaaacgatcaacaagatgaac
cgcatctcgcgtcagatcctgcaggaaaccggcgccgagccggatcccgcgaccctggcg
atcaagatggaaatgccggaagacaagatccgcaagatcatgaagatcgccaaagaaccg
atctccatggaaacgccgatcggtgacgacgacgattcgcatctgggcgacttcatcgaa
gacaacaacacgctggccccggcagatgcggcgttgcatgcttcgatgcgcaacgtggtc
aaggacatcctggattccctgaccccgcgcgaagccaaggtgctgcgcatgcgtttcggt
atcgagatgtcgaccgaccatacgctggaagaagtgggcaagcagttcgacgtgacccgc
gagcgtatccgtcagatcgaagccaaggccttgcgcaagctgcgtcacccgtcgcgctct
gacaagttgaagagcttcctcgaagggaattga
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