Herbaspirillum seropedicae SmR1: Hsero_1087
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Entry
Hsero_1087 CDS
T01268
Name
(GenBank) inner membrane protein (Large repetitive protein)
KO
K20276
large repetitive protein
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hsero_1087
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Big_13
Big_6
Motif
Other DBs
NCBI-ProteinID:
ADJ62604
UniProt:
D8J1I3
LinkDB
All DBs
Position
complement(1202536..1208184)
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AA seq
1882 aa
AA seq
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MTNSIVGDNTNRSQRSLQEATTTAASAAGAGVNSDAAGNASPPSMAVLELVLDNGISQTD
KITNDGRVRVSGIEEGATWQWSTDNGANWSNASRESSGVVELSGDGAKSLLVKTTSKEGV
ESTSQINFVLDTFITPVYARPSNASESGYIGLNGNAEKGSMITVRSDYNSKILGTVKASS
DDGSWSLPLPGTIKISGLERVDGSAGSANGTYTVLSSEEAEGLVNQFSKDFAPEGKSLLD
TSRTTFKMTNDSETWYLWHNVDGSYRISKLSGTEEWYRADSAYPGQSSPRYGQQSWSAVD
ISAKQLALEELKSETERSHLKKLDKVLLEDTGFEDVSRVIFDITQEDIAGNINQNGSAHL
YVKTTAPIQIDMNGNDDGVGRSTKVTSAMLRNGVAFAPDVSFPSNADHHAIDEIWVSFRG
RSQDLPGDQIVLDGEWSRNQDIAPVNGKTIGSVSWVNYSYNKGFYDGQLRLTKNDLETGR
KYFSKAEAEEIIENIKFKSTSGKGGDIAMYVSVRGNFTTEDRWGANLDIDEYYLAAEAQP
AGSKDEPPKQDVIPAGAARLELVEDSGIDRSDKVTNDGKVRISGIPSDASWQWSSDQGKT
WSKQSTESESHVILTGDGEKNLMVKVMDKSGKESTSTLAFTLDTVAERPSVQAELVDTPT
PLLKGTAEKGARLIFRTADNLGQTLGSTVASIEDGSWSMPFVISEKVTGLKKSDGSESSA
NGVYTLLSLSESQALQHSFSNDFSFTGKSVLDTSRSVYSMKTPTETWYVWAPLGENYRIS
RTQGSDEWFLREGSNDYWPRWGSWYSSDLTALQLQAEPVLEDGTRSHRQKQKGGFGEEHG
FPADAEGRVRVQQIDIADNFSEVAESPYYLEAKTTSRRPLDIDLSTPGFQSTVAHYATVS
DLILGAAFVPDADKLFINTYSYPRALLFQFSGSGLDIAKDRLLLDEGISLDKDIAMRFGR
TIGGVTGVDYSFDADSKTLTIEGYSSRVFPPELKELGAIIKAIKLQNPESQTGERTMTVK
PTRSNEDGFSSWSTSLIVGNDSLALKADPYSSSTADHRVQMLTKTGLLETGVSLHQDILA
PASNQIRALQVKLSGPGLSTEDKLRLDLGILVPPKLSATQIEADHGPLRYTYAAKEQTLS
IDSASGKALTGAQVQAIVRLVKLVNPLGLDGERQAQFRLIDMDGEMGTPSTTRLLVDTQA
PVLDLDFFTPGTQSLSEKTIGLGRANSDGYPEGLFSHRITAPMANDVARIKLQFSGKDAP
LSFSEDVLALKNEDYWQPVAEIDLGKSNTVHGKYIGKLYDFNYTYDAATKELVFQKWLGE
SFLGTEVKALLESLHYKIGSKEPGTRSIDITLTDQAGNSSSATTRIKVDTTPAPAVKAEL
VAQNQMSYQVLNLGDILGQVHPHNLSKGESVNLPLPVGMDAQTFLAAVKGISAEWGGRGI
TGNPNTTFAEYKSYLVFDKPLTSGQSFGMAHQSGAYVKGNMFSFTATADGKGLVLTNKGG
SYASNLDMYQFGGSEQSTNGNYDIGNIRILYQVDTGMSNLNPTVKVKFNASEASVGDIVS
VRSGNSVASKTLTANDLASPEASVSLTLAESILGSDNYLYTEYKEASGNIASANEITAYA
DRPQSVVAPVLSDLNVASPNKGGVQALNDSTTQYASISDPGAPWAPGNYERGLLFGGKVG
AEGSSDKYLITVKMGSKVLAFDTVNAGDFTLSSAANLIAPGLHEDLSFTATNITSGNNNG
MTSTVTGLKLGHYWATQFLGDTRGGHGNDNFLLGATKNGLNTLIQTNGGDDTLTLGAFGK
QGNFAATITDFTAGADKIAVFGKSIDLGNLQQFVKEVAPIQGGNGTKVVVDLDGAAAGNQ
TYTLHLQNVAYQPANTHTLFGI
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgacgaattctatcgtcggcgataacaccaaccgtagccagcgcagcctgcaggaagcg
accacgacggcggcatcagccgctggtgctggcgtgaacagcgatgcggctggaaacgca
tccccaccctccatggcggtgctggaactggtgctggacaacggcatttcccaaaccgac
aagatcaccaatgatggtcgggtcagagtcagcggcattgaggagggtgcgacctggcaa
tggagcacggacaacggcgccaactggagcaatgcttcgcgtgagagcagcggagtggtt
gaactgtcgggtgacggggcgaagtcgctgctggtcaagaccacgagcaaggagggggtg
gaatcgaccagccagattaattttgtgctggacacttttatcacgcctgtatatgcgcgc
ccaagcaacgcctctgaaagtggatatatcggactaaatggcaacgctgaaaaggggtca
atgatcacggtgcgatctgattacaattccaaaatactaggcactgtcaaggcttcctct
gatgatgggagctggtccttgccactgccaggcaccatcaagatcagcggcctcgagagg
gtagatggcagcgccggatctgccaacggcacctataccgtgctctcgagcgaggaggcg
gaaggcttggtcaatcaattcagcaaggactttgccccggaaggaaaatcccttctcgat
acgtccaggacgacgttcaagatgaccaacgattcagaaacctggtatctctggcataac
gtcgatggcagctaccgaatctcgaagctgagtggaacagaagagtggtaccgggctgat
agtgcctatcctggacagtcatcgccgaggtacggccaacaatcatggagcgccgttgac
atctcggccaaacagttggctttggaggagttaaagagcgagactgagcgttcacatctg
aagaaactcgataaggtactacttgaggacaccggatttgaggatgtgagccgggtgata
ttcgacatcacgcaagaggatattgctggaaacatcaatcaaaatggatcagcccacctc
tacgtaaaaactactgctcccatccagattgacatgaacggcaacgatgacggagttggc
cgatccacaaaagttacctccgccatgctacgaaacggggtggcctttgctcctgatgtc
agctttccttccaatgccgatcaccacgcgattgatgaaatctgggtctcgtttcgtggt
cgttcccaggatttgccaggcgaccagatcgtcctggatggtgaatggtcgaggaatcag
gatatcgcccccgtcaacggaaaaacgataggctccgtatcttgggttaactatagctat
aacaaaggtttctatgacggacagctccggctcaccaaaaatgatcttgagaccggccgc
aaatatttctccaaagccgaagcagaagaaatcatcgaaaacatcaagttcaagagcacc
agtggcaagggaggcgatattgcgatgtacgtgagcgtgagggggaacttcacaacagag
gataggtggggagcgaatttggacatcgacgagtattacctggcggctgaagcgcaacct
gccggttccaaagacgaaccgcccaaacaggatgtgattcccgcaggggccgccaggctc
gagctggtagaggacagcggcattgatcgatcagacaaggtcaccaacgatggcaaggtc
aggatttccggcattccttcggacgcaagctggcagtggagttcagaccaggggaagact
tggagcaagcaatccaccgagagcgaaagtcatgtcatcctcacaggagatggtgaaaaa
aacctgatggtaaaggtgatggataaaagcggtaaagaatccaccagcaccttggcattc
actcttgacacggttgccgagcggccatccgtgcaagcagaactcgtcgacactcccact
cccttgttgaaaggcacggctgaaaaaggagcgcgcctcatcttccggaccgccgataac
cttggccagacattgggcagcaccgtcgcctccattgaggacgggtcgtggagcatgccg
ttcgtgatcagcgagaaggtaacaggactcaagaaatccgatggcagtgaaagctccgcc
aacggcgtttatacattattatcgttaagcgaaagccaagccctccagcacagtttcagc
aacgacttttcgttcaccggaaagtccgtactagatacatcccgcagtgtttacagcatg
aaaacgccaaccgagacctggtatgtttgggccccgctgggcgagaattatcgcatttca
cgcacacagggtagcgatgagtggtttcttcgggaaggttctaacgattactggcctcgc
tggggctcttggtattctagcgatctcaccgctctgcagttgcaagccgagcccgtatta
gaagacggtacgcgttcccatcgacaaaagcaaaagggaggctttggtgaggaacatgga
ttcccggcggatgcagagggccgagttcgggtacaacagatcgacatcgctgacaatttt
agtgaggtagcagaaagtccttattatttggaagccaaaacgacgtcgcgccgccctctc
gatattgatctttcaacacccggattccagtcgacagtagcgcattacgctaccgtatct
gacttgattcttggcgcggccttcgttccagatgccgataaactgtttatcaatacttac
tcctatccaagggcacttctatttcagttctctggaagtggtcttgacattgcaaaagat
cggctgctgctggacgaagggatcagcctggacaaggatattgcaatgcgattcggtaga
accatagggggcgtcacgggagttgactattctttcgatgccgacagcaaaacactgacg
attgagggatatagtagtagggtatttcctcccgagctcaaggagctaggcgccatcatc
aaggcaatcaagctccagaacccagagagtcaaactggagagcggacaatgactgtgaag
cccacacggtcgaatgaggacgggttctcatcctggtctacctcactcatcgtaggcaac
gatagtctcgcgctcaaagcagatccctactcatcatcaacagcagatcatcgcgttcag
atgttgaccaagaccggcctgctggaaactggcgtttcacttcaccaagatatccttgcc
cctgcgtcgaatcagatccgggccctgcaggtcaaactctcgggaccagggcttagcact
gaagacaagttgcggttggacttgggcatcctggtcccaccgaaactgtcggcgacgcaa
atcgaagcagatcatgggcctctacggtacacctatgccgccaaggaacaaacgcttagc
atcgacagtgcttcaggaaaggccctcacgggcgcccaggtccaggcgatagtcaggcta
gtcaagctggtcaatcccttgggtctggacggcgaacgccaggcgcagttcaggctcatc
gacatggacggagaaatgggcacgccttcgaccacaagactgcttgttgacacccaggct
cctgtgctggacctggatttctttacgcccggaactcaatcgctttcagaaaagacgatc
ggtctcggacgtgcgaactctgacgggtacccggagggcttgttttcgcaccgcatcact
gctccgatggccaacgatgtcgccaggataaagctacagttttctgggaaagatgcgccc
ctaagcttcagcgaggatgtgctcgcgctcaagaatgaggattattggcaacccgttgca
gaaattgatctgggcaaatcaaacaccgtccatggtaagtacattgggaagctttacgat
ttcaactacacatacgatgcggccacgaaagaactggtctttcagaagtggctgggtgaa
agcttcctgggcacggaagtcaaagcgctgctggaaagtttgcattacaagatcggctcg
aaggagcccggcacacgttctatcgatatcactttgaccgaccaggccggcaacagtagt
tcggccacgaccagaatcaaggtggatacaacgcctgccccggcggtgaaggctgagctg
gtagcgcaaaatcaaatgagttaccaagtcctgaacctgggcgacattctcggccaggtt
catcctcacaatctcagcaaaggcgaaagtgtgaacctgcccctgcctgtgggaatggat
gcccagaccttcctggcggctgtcaagggcatctctgctgaatggggaggacgtggcatc
actggcaatcccaatacgacttttgccgaatacaagagctatcttgtcttcgacaagccg
ctgacatccggccagagcttcggtatggcccaccagagcggcgcatatgtgaaaggcaat
atgttcagcttcaccgcgacggccgatggcaagggactggtgctcaccaacaagggcggc
tcctacgccagcaacctcgacatgtatcagttcggcggaagcgaacaaagcaccaatgga
aactacgacatcggcaacatccgcatcctttatcaagtcgataccggcatgagcaacctg
aacccgacggtcaaggtcaagttcaacgcaagcgaggccagcgtcggggatatcgtctct
gtcagatcgggcaattcggtagccagcaagaccttgacggcgaatgatctggcctcgcca
gaagcgagcgtcagtctgactttagcagagagcatactcggaagtgataactacctctac
accgagtataaggaggcgtccggcaatattgcgagtgcgaacgaaataactgcctacgcc
gaccgaccacaatctgtcgtcgccccggtcctaagcgacctcaacgtcgccagccccaac
aagggaggcgttcaggcactcaatgattccaccacccagtatgcttcgatcagcgacccc
ggcgccccctgggcgcccggcaactacgaacgcggcttgctgtttggcggcaaagtcggc
gccgaaggctcatctgacaagtacctgatcaccgtgaagatgggcagcaaggtactcgcc
ttcgacacggtcaatgcaggcgacttcacgctctcctcggcggccaacctgattgcaccg
ggcctgcacgaagatctgagtttcacggccaccaatatcacctccggcaacaacaacggc
atgacctccaccgtgaccggcctgaaactgggccactactgggccacccaattcctgggc
gacacccgtggcggccatggcaatgacaacttcctgctgggcgcgacgaagaacggcctc
aacaccctgatccagaccaacggcggggacgacaccctgaccctgggcgcgttcggcaag
cagggcaacttcgccgccaccatcaccgacttcaccgccggtgcggacaagatcgcggtc
tttggcaagagcatcgacctaggcaacctgcagcagttcgtcaaggaagtcgctcccatc
cagggcggcaatggaaccaaggtagtggtcgatctggacggcgcagctgccggcaaccag
acctacacgctgcatctccaaaacgtggcctatcaaccggccaatacgcatacgctcttt
gggatctga
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