Herbaspirillum seropedicae SmR1: Hsero_1455
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Entry
Hsero_1455 CDS
T01268
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00010
Glycolysis / Gluconeogenesis
hse00020
Citrate cycle (TCA cycle)
hse00260
Glycine, serine and threonine metabolism
hse00280
Valine, leucine and isoleucine degradation
hse00310
Lysine degradation
hse00380
Tryptophan metabolism
hse00620
Pyruvate metabolism
hse00630
Glyoxylate and dicarboxylate metabolism
hse00640
Propanoate metabolism
hse00670
One carbon pool by folate
hse00785
Lipoic acid metabolism
hse01100
Metabolic pathways
hse01110
Biosynthesis of secondary metabolites
hse01120
Microbial metabolism in diverse environments
hse01200
Carbon metabolism
hse01210
2-Oxocarboxylic acid metabolism
hse01240
Biosynthesis of cofactors
Module
hse_M00009
Citrate cycle (TCA cycle, Krebs cycle)
hse_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
hse_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
Hsero_1455 (lpdA)
00020 Citrate cycle (TCA cycle)
Hsero_1455 (lpdA)
00620 Pyruvate metabolism
Hsero_1455 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
Hsero_1455 (lpdA)
00640 Propanoate metabolism
Hsero_1455 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Hsero_1455 (lpdA)
00280 Valine, leucine and isoleucine degradation
Hsero_1455 (lpdA)
00310 Lysine degradation
Hsero_1455 (lpdA)
00380 Tryptophan metabolism
Hsero_1455 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Hsero_1455 (lpdA)
00670 One carbon pool by folate
Hsero_1455 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hse04147
]
Hsero_1455 (lpdA)
Enzymes [BR:
hse01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
Hsero_1455 (lpdA)
Exosome [BR:
hse04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
Hsero_1455 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Biotin_lipoyl
Pyr_redox
Pyr_redox_3
FAD_oxidored
GIDA
FAD_binding_2
Biotin_lipoyl_2
AlaDh_PNT_C
Thi4
NAD_binding_8
FAD_binding_3
HI0933_like
GCV_H
DAO
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
ADJ62971
UniProt:
D8IPF1
LinkDB
All DBs
Position
1677210..1679000
Genome browser
AA seq
596 aa
AA seq
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MSLSEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEVK
VKVGDKVAEGSLLLLVEAAGQAAAAPAPAAPPAPAAAAAPAPAAAPAAAPTAAPTAASFG
GSADVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVEREATLGGVCLNVGCIPSKALLHVA
AVIDETAAMASHGVTFGKPQIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVNGDGQFA
GPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKRMLV
IGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKTKTV
AVEALPEGIKVTFEAAEAGATAPEPQLYDLVLVAVGRSPNGKKLSADKAGVIVSDRGFIA
VDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASVIPSVAYTDPE
VAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETHRIIGGGIVGT
HAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGMAAEVAEGHCTDLPPQRKK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctgaagtcaaggtccccgatatcggggatttcaaggaagtcgaagtcatc
gaggtgatggtcaaggttggcgacaccatcaaggtggatcaatcgctgatcaccgtcgaa
tccgacaaggccagcatggaaatcccgtccagccaggccggcgtggtcaaggaagtcaag
gtcaaggtcggtgacaaggtcgccgaaggttcgctgctgttgctggtggaagcggctggc
caagccgctgctgccccggcccccgccgctccgccagcaccggctgcagcggcagcgcct
gctccggccgccgctcccgctgccgcaccgaccgccgcaccaaccgctgccagcttcggc
ggcagcgccgacgtgcaatgcgacgtgatggtgctgggtggtggccctggcggttactcg
gcggccttccgtgccgccgacctgggcctgaacactgtcatcgtcgagcgcgaagccacc
ctcggtggtgtctgcctcaatgtcggttgcatcccctccaaggcgctgctgcacgtggcc
gcggtgatcgacgagactgccgccatggcctcgcacggtgtcaccttcggcaagccccag
atcgacatcgacaagctgcgcgcctacaaggacaaggtcatcggcaccatgaccggcggc
ctggccggcatggcgaaggcacgcaaggtgcaggtggtcaacggtgacggccagtttgcc
ggccccaaccatatcgaagtcactgccgctgacgggagcaagaaggtggtgcagttcaag
cacgccatcatcgccgccggctcctcggtggtgaacctgcccttcgtaccgcaggacccg
cgcatcgtcgattccaccggcgcgctggaactgcgccaggtgcccaagcgcatgctggtc
atcggcggcggcatcatcggcctggaaatggcgaccgtctattccaccctgggcgcgcgc
atcgacgtggtcgagatgatggatggcctgatgcaaggcgctgaccgcgacatggtcaag
gtctggcaaaagttcaacgagaagcgcttcgacaacgtcatggtcaagaccaagactgtg
gccgtggaagccctgcccgaaggcatcaaggtcactttcgaagccgctgaagccggcgcc
accgcacccgagccgcaactgtacgacctggtgctggtggccgtgggccgcagcccgaac
ggcaagaagctgtcggccgacaaggctggcgtgatcgtgtccgatcgtggcttcatcgcc
gtggacaagcagatgcgcaccaacgtgccgcacatcttcgccatcggcgacctggtgggt
cagcccatgctggcgcacaaggcggtgcatgaaggccacgtcgccgctgaggcgattgcc
ggcgagaagagcttcttcgacgccagcgtgatcccgtccgtggcctataccgatccggaa
gtggcatgggtcggcgtgaccgaagacgaagccaaggccaaggggatcaagatcgagaag
ggccacttcccgtgggctgcttccggtcgcgccgtggccaatggccgttcggaaggtttc
accaagctgctcttcgatgccgagacccatcgcatcatcggtggcggcatcgtcggtacc
catgccggtgacatgatcggcgaagtggccctggccatcgagatgggcgccgatgcggtc
gacatcggcaagaccatccacccgcacccgacgctgggtgagtcgctgggcatggccgcc
gaagtggcagaaggtcattgcaccgacttgccgccacagcgcaagaagtaa
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