Herbaspirillum seropedicae SmR1: Hsero_1898
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Entry
Hsero_1898 CDS
T01268
Name
(GenBank) sigma-54 dependent transcription activator protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hse03000
]
Hsero_1898
Transcription factors [BR:
hse03000
]
Prokaryotic type
Helix-turn-helix
Other families
Hsero_1898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_30
Mg_chelatase
PAS_4
HTH_23
HTH_22
HTH_50
HTH_Tnp_ISL3
HTH_29
IclR_C
HTH_28
HTH_1
HTH_17
NUMOD1
AAA_3
AAA
P22_Cro
IstB_IS21
HTH_7
HTH_20
HTH_AsnC-type
AAA_2
AAA_7
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ADJ63407
UniProt:
D8IS63
LinkDB
All DBs
Position
complement(2154720..2156747)
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AA seq
675 aa
AA seq
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MQYQANRPSAGALLGTSPLVQASTDGVPDLQAIERSHQRSSSYGIMRGQRPDLDSLSRAD
LAQTLEANQTLSGHARPVMETLYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKADRVAL
GPGGRWSEQLRGTNAIGTALFEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLD
VSGECGSFHKHTMALVRMSAQMIENHLLAGSFPDCITLHFHSRAEFVGTLVEGIVSFTPG
GRFLAANRSAQFQLGLTLAALQSHTFASLFGVPLSLLFEHHRKAAPGLLELCLHNGIRIH
GRAELRLRDQHFQAAREAVIDAPGLLPPAPNTTTPPPSPPQQRARHQRRPDLQALDTGDV
RMSAIIAKLRRVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNC
SAIPENLIEAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVL
QERAVTPLGSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSD
LPQLIERILEDEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEEAIGPH
HLPDDFLEEAGAPGALHDGMHTMHAVRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALG
VSRNTIYRRLKSRGH
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgcaataccaggcaaaccggcccagcgccggtgcattgctgggcacctcgccgcttgtg
caggccagcaccgatggcgtgccggatctgcaggccatcgagcgctctcaccagcgcagc
tcgtcctacggcatcatgcgcggccagcggcccgacctcgactcgctctcgcgcgccgac
ctggcgcagaccctcgaagccaaccagaccctctccggccacgcccgcccggtcatggaa
accctctacgaccagatccgcaatacccacagcatggtgatcctgtcggatgcagaaggc
accatcctgcataccctcggcgacagcgatttcctggccaaggccgatcgcgtcgccctt
gggccgggagggcgctggtccgagcaactgcgcggcaccaacgccatcggcacagcgctg
ttcgagcagaagcccactaccgtacacgcccagcagcattacctggacgccaatcgcttc
ctgacctgctcggccgcccccatcttcgaccatcgcggccaggtgctgggggtgctggat
gtctcgggtgaatgcggcagtttccacaagcacaccatggcgctggtgcgcatgtcggcg
cagatgatcgagaatcacctgctggccggcagctttcctgattgcatcaccctgcatttc
cacagccgcgccgaattcgtcggcacgctggtcgaaggcatcgtcagcttcacgccgggc
ggtcgcttcctggcggccaatcgcagcgcgcagttccagctgggcctgaccctggcggcg
ttgcaatcgcataccttcgcttcactgttcggggtgccgctgtcgctgctgttcgagcat
catcgcaaggccgccccgggcctgctggagctgtgcctgcacaatggcatccgcatccat
ggccgcgccgaattgcgcctgcgcgaccagcatttccaggccgcgcgcgaggccgtcatc
gatgcgcccggcctgctcccgcctgcgcccaataccaccaccccgccgccgtcgccgccc
caacagcgcgcgcgccaccaacggcgaccggacctgcaggcgctcgataccggggacgta
cgcatgagcgccatcattgccaagctgcgccgggtgatcgaccgcgacatccccatcctc
atcaccggcgagaccggcaccggcaaggaatggctggcgcaagccatccatggcgacagt
gcacgctttggcgcccgccagaaccgcgcaggcgcggcccccttcgtcgcagtgaactgc
tcggccatcccggaaaacctgatcgaagccgaactgttcggctatgaagacggcgctttc
actggcgcacggcgcaagggtgcgctgggcaagatcgcccaggcgcacggcggcaccctg
ttcctggatgagatcggcgacatgcccctggccctgcaaggccggctgctgcgcgtgctg
caggaacgcgccgtgacgccgctgggcagccagcgcgtcatcccggtggatttcgcactg
gtctgcgcgaccaatcagccgctgcgcgagatggccgcgcgccatgccttccgcgaagat
ctgtactaccgcatcaatggcttgcaggtgaagctgccggcgctacgggaccgcagcgac
ctcccccagctgatcgaacgcatcctggaagacgaaggcggcccccacgcgccgcgcttc
gacgcgcaagcacaggcgctgctgctggccagccactggcccggcaacctgcgccagctg
gccaacctggtccgcacgtcgctggccatggccgaaggcgaagaggccatcggtccgcat
cacctgcccgatgatttcctggaagaggcaggcgcacccggtgcgctacacgacggcatg
cacaccatgcacgccgtgcgcagcgattgcctgtccatccaggacaatgaatgggccgcg
atcgaacgggccctgcgcacccacgccggcaatgtcagcgccgccgccaaggccctgggc
gtgtcgcgcaataccatctaccggcgcctcaagtcacgcgggcactga
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