Herbaspirillum seropedicae SmR1: Hsero_2600
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Entry
Hsero_2600 CDS
T01268
Symbol
holB
Name
(GenBank) DNA polymerase III delta subunit protein
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03430
Mismatch repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_2600 (holB)
03430 Mismatch repair
Hsero_2600 (holB)
03440 Homologous recombination
Hsero_2600 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_2600 (holB)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_2600 (holB)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hsero_2600 (holB)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hsero_2600 (holB)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hsero_2600 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_16
TsaE
RNA_helicase
Mg_chelatase
DNApol3-delta_C
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ADJ64096
UniProt:
D8IXJ4
LinkDB
All DBs
Position
complement(2967838..2968875)
Genome browser
AA seq
345 aa
AA seq
DB search
MSLTSSDVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPE
AHACGVCASCNWFSQSNHPDYRRVRPEVLDDETADDEAGEEKKTAKASKAPSKDIKIDQI
RALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLP
TILSRCRKFALSAPGHGEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGREALDEL
LRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRL
AERVDALALSRALRGMGDRRAIADHPLSAKLFIEEMLIDYAGLFD
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgacttcttccgacgtgttgctgccctggcagggcgagagctggcgccagctg
caacaattgcgcgaacggctgccgcatgcgctgctgttctacggcgcagcgggcacgggc
aagacgcagttcgtcgaagccttcgccaagtcgctgctgtgtgaatcgcccacgcccgag
gcccatgcctgcggggtgtgcgcctcctgcaactggttctcgcaatccaatcatccggac
taccggcgcgtgcgtccggaagtgctggacgacgaaacggccgatgacgaggctggcgaa
gaaaagaagaccgccaaggccagcaaggcgccttccaaggacatcaagatcgaccagatc
cgtgcgctggccgatttcatgaacgtctccacccaccgttcgggcttgcgggtggtgatg
ctctatccggccgaggcgctcaataccgccgccgccaatgccttgctcaagacgctggaa
gagccgccgccgggcaccatgttcctgctgctgtccaatcgcctggatcgcttgctgccg
accatcctctcccgctgccgcaagttcgccctgagcgcgcccggccatggcgaggcgctg
gcctggctcaagcagcagggcgtcaaggacgccgatgcctggctggccgagcagggcggc
gctccgctggccgcgctggaagcggcccagggcgaaggccgtgaggcgctggatgaattg
ctgcgtcacttggcgcagcccggcgtggatggcgctttgcgcgccgccgacaaattgcag
aagacgcccgccgccgatctggtcggctgggtgcagcgctggctgtatgacctgctgtcg
ctgaagtcggccggcgtggtgcgctattatccgcgctatggcaaggagctgggccggctg
gccgagcgggtcgatgcgctggccctctccagggctttgcgcggcatgggtgatcgccgc
gccattgccgaccatcccttgtcggccaagctcttcatcgaggaaatgctgatcgattac
gctggcctgttcgactga
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