Herbaspirillum seropedicae SmR1: Hsero_2728
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Entry
Hsero_2728 CDS
T01268
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase protein
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00300
Lysine biosynthesis
hse00470
D-Amino acid metabolism
hse01100
Metabolic pathways
hse01110
Biosynthesis of secondary metabolites
hse01120
Microbial metabolism in diverse environments
hse01230
Biosynthesis of amino acids
Module
hse_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Hsero_2728 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hsero_2728 (lysA)
Enzymes [BR:
hse01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Hsero_2728 (lysA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Ribul_P_3_epim
Motif
Other DBs
NCBI-ProteinID:
ADJ64224
UniProt:
D8IYN9
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All DBs
Position
complement(3108459..3109715)
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AA seq
418 aa
AA seq
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MHADPRQKPLHAEQTAFPIVDGMLHVGGMPLDRLALRVGATPFYVYDRALLRARVAHLRA
HLPAELALHYSIKANPMPALVQAMAQLVDGFDVASGGELATALDTPMPVQHISFTGPGKS
LAELRRALAAGVMLHVESEREAEAVAALAQELGVRPGVTLRINPPFELKSSGMRMGGGAK
PFGVDAEAAPALLRWLAGQGVQVAGLQIFCGSQSLDAQAIMAAQSSSFELALQLAGEAGL
SLRVLNIGGGFGIPYFPGERALEIAPIGAHLAQWLPRLRALHPQLRVVMEMGRYLVGEAG
LYVSRVIDRKQSRGEVFLVVDGGLHHHLAASGNFGQVIRKNYPVTIVPQQPQRSGGGTTE
RVSVVGPLCTPLDVLAAQMLLPAAAVGDLVVVFQSGAYGLSASPTAFLGHPAPAEVLV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacgctgacccacgccagaaaccgctccacgccgagcagaccgccttccccatcgtg
gacggcatgctgcacgtgggcggcatgccgctggaccggctggccttgcgggtgggcgcg
accccgttctacgtctatgaccgcgccttgctgagggcgcgggtagcgcatctgcgcgcc
catctgccggcggagctggcgctgcattattcgatcaaggccaatcccatgccggcgttg
gtacaggcgatggcgcaactggtcgatggctttgacgtggcctcgggcggcgaactcgcg
accgcgctggatacgcccatgccagtgcagcacatcagcttcaccggaccgggcaagtcc
ctggccgagctgcggcgcgcgctggcggccggggtcatgctgcacgtggaatccgaacgc
gaggccgaggcggtagcggcgctggcgcaggagctcggtgtgcgccctggcgtcaccctg
cgcatcaatccgcctttcgaactgaagtcctcgggcatgcgcatgggcgggggggccaag
ccctttggtgtggatgccgaagccgcaccggcgctgctgcggtggttggcggggcagggc
gtgcaggtggcgggactgcagatcttctgcggctcgcagagcctggacgcccaggccatc
atggcggcccagtccagcagtttcgaactggccttgcaactggccggcgaggcggggctg
tcgctgcgtgtgctcaatatcggcggcggcttcggcataccgtatttccccggtgagcgg
gcgctggagatcgcccccatcggcgcgcatctggcgcagtggctgccgcgtctgcgcgcg
ctccatccgcagctgcgggtggtcatggagatggggcgttatctggtgggcgaggccggc
ctctatgtcagccgcgtgatcgatcgcaagcagtcgcggggagaggtgttcctggtggtc
gatggcggcttgcatcatcatctggcggcttccggcaatttcggccaggtgatccgcaag
aactatccggtcaccatcgtgccgcagcagccgcagcgctcgggtggagggacgaccgag
cgggtctcggtggtcggtcccctgtgtacgccgctcgatgtgctggccgcgcagatgctg
ttgccggcggcggcggtgggcgacctggtggtggtgttccagtcgggcgcctatggcctg
agcgccagtccgactgccttcctcgggcatccggcgcccgctgaggtgctggtatga
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