Herbaspirillum seropedicae SmR1: Hsero_2781
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Entry
Hsero_2781 CDS
T01268
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03410
Base excision repair
hse03430
Mismatch repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hsero_2781 (recJ)
03430 Mismatch repair
Hsero_2781 (recJ)
03440 Homologous recombination
Hsero_2781 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_2781 (recJ)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Hsero_2781 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Hsero_2781 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hsero_2781 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ADJ64276
UniProt:
D8IYU1
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Position
3176978..3178672
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AA seq
564 aa
AA seq
DB search
MIRVATRTYDLVQAEQLINEGVHPVLARVYAARGLSSARELASELNALIAPSGLLHIDAA
ASYLADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI
VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQP
QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA
NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL
GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW
HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK
FGGHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLM
DQQVWGQGFAPPVFCDHFRVLNQRILKEKHLKLQLEKDGRRYDAIWFGHTDSLPELAKVA
FRLDANEYNGRTTVQLMVEHAEPA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcgtcgccacccgcacctatgacctggtccaggccgagcaactgatcaacgaa
ggcgtccacccggtgctggcgcgggtgtatgccgcccgcggcctgtccagcgcacgcgaa
ctggccagcgaactcaacgccctgatcgccccctccggcctgctgcatatcgatgcggcg
gccagctacctggctgacgccattgctgcgcgcaagaagctggtgatcgtggccgactat
gactgcgacggcgccaccgcctgcgcggtcggcctgcgcggcctgcgcctcttgggcgcc
caggtcgattacatcgtgccgaaccgcttcgagtacggctatggcctcacgcccgagatc
gtcgagctgaccgtacgcgaaaagaatcccgacatcatcgtcaccgtcgacaatggcatc
gccagcatcgatggcgtggccgaggccaagcggcgcggcatcgacgtggtcgtgacggac
caccacctgcccggcgacgccctgccgcaggcccgcgtgatcgtcaatcccaaccagccg
cagtgcggctttcccagcaagaacctggccggcgtgggggtgatgttctatgtgctgctg
gcgctgcgcgccgagatgcgcaagcgcggcctgttcgacgcccagacccagccccggctg
gacagtctgctggacctggtggcgctgggcaccgtggccgacgtggtcaagctggacgcc
aacaaccgcatcctggtggcgcaaggcttgaagcgcatgcgcagcggcaagatgcatccc
ggcattgccgcgctctttcgcgccgccggccgggaagcgcgccgcgccaccccgttcgac
ctcggctttgcggtcggcccgcgcctgaacgctgccggccgcctggccgacatgtccctg
ggcatcgaatgcctgaccaccgatgacgagggccgcgcctgggccatcgcccagcagctc
gacgccatcaatcgcgagcggcgcgacatcgaagccggcatgcaggataccgccctgctg
ctgctggacgactacaacccggctgaccgccgcaccattgccgtcttcgatccttcctgg
caccagggcgtgatcggcatcgtggcctcgcgcctgaaggacaagttctaccgccccacc
atcaccttcgcgcccggcgacgagggtttcatcaagggctcgggacgttcgatcgcgggc
ttccacctgcgcgatgcgctggacctggtgtccaagcacgccccctcggtgatgaccaag
ttcggcggtcacgccatggcggccggcctgaccatccatgccgaggccttcgatgccttc
tcccacgccttcgaggcggtgggtcgcgactggctcacgcagaaccagctggaacgggtc
atcgagaccgatggcgtgctggaggacgcctattactcggtggagttcatcaccctgatg
gaccagcaggtctggggccagggcttcgcgccgccagtcttctgcgaccacttccgtgtg
ctcaaccagcgcatcctcaaggagaagcacctcaagctgcagctggaaaaggatggccgc
cgctacgacgccatctggttcggtcacaccgactccctgcccgagctcgccaaggtcgcc
ttccggctcgacgccaatgaatacaacggccgcaccacggtgcaattgatggtggaacac
gctgaaccggcctga
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