Herbaspirillum seropedicae SmR1: Hsero_2871
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Entry
Hsero_2871 CDS
T01268
Symbol
nifA
Name
(GenBank) nif-specific regulatory protein
KO
K02584
Nif-specific regulatory protein
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hsero_2871 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hse03000
]
Hsero_2871 (nifA)
Transcription factors [BR:
hse03000
]
Prokaryotic type
Helix-turn-helix
Other families
Hsero_2871 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
GAF_2
AAA_5
Mg_chelatase
AAA_2
AAA
AAA_16
GAF_3
bpMoxR
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
ADJ64363
UniProt:
D8IZM3
LinkDB
All DBs
Position
complement(3257955..3259583)
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AA seq
542 aa
AA seq
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MATILDDRSVNLELVTIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGE
LQLVSAIGLSYEEFQSGRYRVGEGITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGE
VISFVGVPIKAAREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTVRLYRSVAAER
QQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVI
ARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLF
LDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADL
YYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNV
RELENCVERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAHTAPS
SPSGMAKDKPLAAAPPTSERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNIEVK
KF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggccactattctcgacgaccgcagtgtgaatttagaactcgtaacgatttacgagatc
agcaagatattgggttcatcgctggatctatccaagaccttgcgcgaagtcctcaacgtc
ctctccgcccacctggaaacgaaacgggtattgctgagtctgatgcaggactccggtgaa
ttgcaactggtcagcgccatcggcctgagttacgaagaattccagagtggcagataccgg
gtcggcgagggcatcaccggcaagatcttccagacggaaactcccatcgtggtgcgcgac
ttggcccaggagccgctgttcctggctcgcaccagcccgcgccagtcgcaagacggggaa
gtcatttcctttgtgggcgtgccgatcaaggctgcccgtgaaatgctgggtgtgttgtgc
gtttttcgggatggacaatcgccctcgcgtagtgtcgaccatgaggtgcgcctgctgacc
atggtggccaacctgatcggacaaaccgtccggctgtatcgcagcgtagcggccgagcgc
cagcagctgcaagaggaaaagcgccagctgtcccggcaactccagggcaagtacaagctc
gataacgtaatcggcatttccaaggcgatgcaggaagtgttcgcgcaggtacaccagtcc
gccccctcgcgctcgaccatgctgttgcgcggcgagagcggcaccggcaaggaagtcatc
gcgcgcgccatccattacctcagtccgcgcaaggatgggccattcatcaaggtcaactgt
gcggccttgtcggaaaccttgctggaatccgaattgtttggccacgagaagggcgccttc
accggggcccagggtgaacgcaaggggcgtttcgaactcgcccatggcggcaccttgttc
ctcgacgagatcggcgagatctcgccggccttccaggccaagctgctgcgggtattgcag
gagcgtgaattcgagcgggtcggtgggtcgcgttcgatcaaggtggacgtgcgtctggtc
accgccaccaaccgcgacctggagaaggccgtggccaagggcgagttccgggccgacctg
tattaccgtatcaatgtggtcagcatcttcattcctccgctgcgcgaacggcgcgaggat
attccctatctggtggaacacttcctggaaaaattccgtgtggagaaccagcgcgccatg
gtggccatgtcaccgcaggccatgaaggtcatgatgaattgctactggccgggcaatgta
cgggaactggaaaattgtgtcgagcgtactgccaccatgatgcgcggcgatctgatcacc
gaggtgcatttctcctgtcagcagaacaaatgcctgaccaaggtcttgcatgaacccggc
cagcagcaaccggtcgtggtggtgccgctggagcgcatatccgcgcatacggcgccatct
tcgccgagtgggatggccaaggacaagccactggcggccgcgcccccgacctccgaacgc
gaacgtcttatctgggccatggagcaatgtggctgggtgcaagccaaggcagcccgcgca
ctcaacatctcgccgcgccagatgggctatgcgctgcagaaattcaatatcgaggtcaag
aagttctga
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