Herbaspirillum seropedicae SmR1: Hsero_3003
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Entry
Hsero_3003 CDS
T01268
Symbol
rluD
Name
(GenBank) ribosomal large subunit pseudouridine synthase D protein
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hse03009
]
Hsero_3003 (rluD)
Enzymes [BR:
hse01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
Hsero_3003 (rluD)
Ribosome biogenesis [BR:
hse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Hsero_3003 (rluD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
ADJ64491
UniProt:
D8J0D5
LinkDB
All DBs
Position
complement(3419127..3420239)
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AA seq
370 aa
AA seq
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MSRKKPLQITNGDTPVHTDLPQADDFDDAHDGDEIGPGLEPLTLRLDDEVIGQRLDKVLS
GLLPEFSRSRIQQWIEDGHVTVNGAPAKAKMTMLGDELVEVAPQSVPSDQPYGPEPMALD
ILHEDKALIVLNKPAGLVVHPAAGNWSGTLLNGLLHHCPALAKVPRAGIVHRLDKDTSGI
MVVAKTLAAQTDLVRQLQARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQSM
RAKPAVTHYRRLATGEIDRKPVSLIHCRLETGRTHQIRVHLQSLGFPLVGDALYGKHHLV
SVFPRQALLAGRLGLLHPSTGKFRQWAAPLPEDIVALLQRAGIDPALAVIPEMSDEPDEV
ISDDDFDDDY
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtaagaaaccccttcagattacaaatggcgatacgccagtccataccgacctc
ccgcaggcggacgatttcgatgacgcccacgatggcgacgagatcggccccggcctggag
ccactcaccctgcgcctggacgacgaggtcatcgggcagcgtctggacaaggtgctctcg
ggcttgctgcccgagttttcccgcagccgcatccagcaatggatcgaggatggccatgtg
accgtcaacggcgcgccggccaaggccaagatgaccatgctgggcgatgagctggtggag
gtggccccgcagtccgtgccgtccgaccagccctatggccccgagccgatggcgctggac
atcctgcacgaggacaaggccctgatcgtcctgaacaagccggccggcctggtggtgcat
cctgccgccggcaactggagcggcacgctcctcaacggcctgctgcaccactgcccggcg
ctggccaaggtgccgcgcgcaggcatcgtgcaccggctggacaaggacaccagcggcatc
atggtggtggccaagaccctggccgcccagaccgatctggtgcgtcagctgcaggcgcgc
agcatgaagcgccagtatctggccctggtgtgggggctgccacagctctccggcaccatc
aatgcgcccatggcgcgtcatccgcgtgaccgcatcaagatggcggtgtcgcagagcatg
cgggccaagcccgcagtgacccattaccgtcgcctggccactggcgagatcgatcgcaag
ccggtcagcctgatccattgccgcctggaaaccgggcgcacccaccagatccgggtgcac
ctgcaatcgctgggtttcccgctggtgggcgatgcgctctatggcaagcatcacctggtc
tcggtcttcccccgccaggccttgctggccgggcgcctgggactgctgcacccgagcacg
ggcaagttccgccagtgggcggcgccgctgcccgaggatatcgtggcgctgctgcaacgc
gccggcatcgacccggcgctggcggtcatccccgagatgagcgacgagcccgacgaggtc
atcagcgatgatgacttcgatgacgactattga
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