Herbaspirillum seropedicae SmR1: Hsero_3043
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Entry
Hsero_3043 CDS
T01268
Name
(GenBank) hemagglutinin/hemolysin-related protein
KO
K20276
large repetitive protein
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hsero_3043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_13
Big_12
YbbR
Dockerin_1
Motif
Other DBs
NCBI-ProteinID:
ADJ64531
UniProt:
D8J0H5
LinkDB
All DBs
Position
complement(3487036..3496683)
Genome browser
AA seq
3215 aa
AA seq
DB search
MSNDQIKAGTHPVSNKQSTDSPVQLIMPATSPLPQPHSATGTGKSSGKKALVRARSVDGK
ERVDEGQGERVQPADEVMSQEQSLASAEAAMSARHVSEEEADVPRADGEDSSERMQLAQA
DSDSSSNAAAVPAARSNASDAPSSVGEELLRQAAPVPRSREISFLDQLDDWLESDMALPV
GLGAAALGFLALSGGGGGGSSGAAAAEAPPPAVEPPRNEWLMTVTPAAGVFLPNATVKLI
AKKLMADGSWQEVANSTAVDASGRMTLKVAKGSLTAKDVIRLELSDTDPAGKDYKDEVAG
AQTLGGLKLEAYVGAWNADMAVTINPFTTMVVHKLDEAANAANAGGARGNSAVVNDAGAP
GSAPGAGGAGAPGNAPVAGGAGAPVNAPVAGDAGAPVNAPAAGGAGAPVNAAAANAPTTP
AYGADAAKFEAAIAKAFGIQSGDLLHTIPILLNGRPVAGASADAINYGLALGILSGMTQA
QREAGAANPLQAALDLLKSAIQVNGGNVTFALETLRKSLITGSNIDGGLDAGAAKLHAAA
VEDGNNSTSTIKGAQVPYLQVDTTQEKPYAGQTKPVWADAAVSFSSFTNGGLSLKVAPAA
SAKVGDQLLVEFLPLDTTNGRLQGGGAKPFTFKYTYTEKDAEAVRLSAGDSSNNGIGSFT
LVVPTFDESAQFSATRTSVLRTATASSTPGSAPSLLDVNNDGVYRINNSEYGYQLRASGA
VMGAFASGATLNISTQSIGVEAAPNATGGVLFNGSGVPGASNTVRFSVAIGQKINWSGAD
PTLEVRVANHPTPLEATLVSGRNADVLTFKLDLTKPANKNLEGALSVAAHALKFSPDTIL
SDVPGNTLFKTQDGRSWIDSKGSAVADIDAALNVNTALPNSGFSIDTTPPPTPRLTLPGR
PAFDANNYAPDNAKPVSGSLNAAPAGAKFGEHAVVTNEPRIPFKVSFDAADNAQLKQGDR
VKLVVDFPGTQGREIASASLSKDTGGNWTATFDPASYSENIQQLITRFKTTTDLDKVTFS
AVVVDQAGNQSVPGSLKNFAEGGVDNIWIDLKAPAKPSLVALNRASDTGRDDAPDTRADG
ITSMAKPTLQIEGGEPGGFARVYANADGTGLLGEGRISNGQSLTGGSVNSASVALTGGTG
LVNGANTVYVQLIDAAGNKSEIQSKQIEVLLPLPMDARADIALTSTAPHNGFYVTGDVIE
VQVTFDREVYLKQGKVTDQLYVNLIQDGTGANAAKILKATYQSGLGKGTTDPGSKVLTFK
YTVGAGDDAPAGVKYKVGDLINVGHVLEDKAGSDVPGMSKPYTGAGLTIDTVAPPSRHSR
WMPICYPTRHAPRQRVAKGQPLKVRGSEVGSKLAIKLTNASGVVENLDPLTATGAGQTIN
LTDVQIAKLGDGLITVTAMASDTAGNVRAAAETKFTLDTTAPAVSASVTATGGGQPPAVT
KEQISFVVTFNEKLRVPVTIDNFTATNGTVNKVEAVTGAGNTNANSYTVLVTPNPDMPAG
NKVELKLKANGATPVLDVAGNPAELGAVIASQAIDTRGPTVISVPADNAPPAPPTMNKDI
VFNVRFDEMGSVSQMGNIGVGNFKAINGKVTKVEPVGASRTEYNVTVKPNAELTGNSNEV
QLNFFAVADIRMGQGSAGVADSLGNAARDQPNIARQIIDVQQPSITADGVSVSSRSLASG
NPDKPGYVHAGDTVRLAVVFDEAVTVSGTPKLNLQVGANTRSASYKTLSTDGKTAYFDYV
LTAADTATDGISIPANALQLPTGARITDLAGNAAKVDSSVVALNPAYKVDNSAPTLTEVK
VSEMTADNGSGIYKAGSVITVQAKFSEPVDINTTGGAPRIKLTIGGDERTAAYVDRVPGD
APDVLKFSYTVLSGDNAPAGVAIPASPLVLNGASITDVSGNRAVLTLGGVQPNASFKIDT
TAPTVTAVAIESASVSGTEGNYRAGDVITAVVTFSEEVKLAPNAQASLNLMVGGDSRTAT
LVTPTANAASNTLRFSYTLQSADADSNGISIAPNSLALAGVTDKAGNAAAPAHVAVADNP
LFKVDNAAPTILSFSTTTPDGTYNIGKVINLRATASEELRPGAKITVTLDNGDTAVLTRD
ASNRTLLEGSYTVVGGKPSTNDLTVTSFTQAAKDLAGNDLLTTMPAAGKNLGDNRAIVLD
AMMPPQPTMFRLDAASDGGASPNDGLISEVLPTFHFDGLVRGATVTVTGTFKGVTQTLLQ
FTASATAQDQKLTTPLTDGVYTDISVIQTSPSGNASQPRLLGNVTTPGSLELSTAAPGVA
SQLVFDIDQDLQTEASLETGAPANAPRDFITLIRTPKFNFQGGNDGEVAVLFRDTNGNNM
VDAGEQVLGRQIIGVTNATNYRLQPGTSGNGLNGHYVEVAAENALGNGPYTDIKLALQSK
YGTYGTAVPMARGATSGSGAGGITVINNKPVPDITGVTTNATAGESSAATMSFNVRGGQT
GARIIIKADRLDDNGTLIAAQQEIGRGVPDGNGVLTLQVGQFNGSYGNFKATQDYAGRIS
NVAVTTVTNTGPQPLGTITWDHLPISVTASTDLAANSRPGTPFTVKFDFSKAPNGFAQDD
IAVTGSGVLSAFAPVLGSNNKRYSATFTPTDATVTRATFQVKDGSYTEPNNQSGAASNKL
ELVFNRAGAVAVSGASADGKPQLGDTLTATVSDPDGVKSDVPVAYVWKAGGVAIVGATGA
SLRLTDAQMGKAISVEARYTDNLGLAEVSSSASTPNVTGPNAPGVLKFTVNGQETSVVRL
GDNVTAVLSDGDGFDPARVTYSWRGERLARPLKGADNATGSTFQIAQDEDVHSFGTTQIL
VQAEYTDLHGTSERVSGYAYLKYPQRPGTVVFDALNPPNTPYRSGDELHAIVKDDNGTGN
GGVTYTWYANDTVIPGQTGSHLQLIDAYRGKAIKVSVSYTDGEGLLETPTSQAIRVEQPN
NNAPVGAVTLAGSGELGTTVTASNTITDADGMPGQITYKWFASGDAATKGDLITAPVFVN
NDSSKLLITSDLVGKSLKAEANYTDGQGTDEKVLAATAKTAGWMTSVTLGNLSYAQFEAQ
PQVVSGAKLISRHPTSNVFILDVNGDGQITAADATTYITSLDANGSISFTTEAGRGKATL
LAANSPLWATLLPQPAEWGPANGVFGLPARNGQPAVTGGDFWTSTAGTAADSHQVWSKSG
AADGTPGAYEQSNASYMNDPNRLHFNVFQVSVLPA
NT seq
9648 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgatcaaatcaaagctggtacccatccggtcagcaacaagcaatcgaccgac
tccccggtacagttgatcatgccggccacctcaccgctcccgcagccgcactccgcgacc
gggacgggtaagtcatccggcaagaaagcgctcgtgcgagcgcgctctgtggacggcaag
gagcgggttgacgaagggcagggcgaacgggtgcagccggccgacgaggtgatgtcccag
gagcagtccctggccagcgccgaagccgccatgtcggcgcgccacgtcagcgaggaagag
gccgatgtacctcgagccgacggcgaggactcctccgagcgaatgcaactggcccaggcc
gacagcgattccagttccaacgccgccgccgtcccggcagccaggtccaacgccagcgac
gcccccagcagcgtgggcgaggaactgctgcgccaggccgccccggtgccgcgtagccgt
gagatttccttcctcgaccagctcgacgactggctggagagcgacatggccttgcccgtc
ggtctgggcgcggcagcgctgggctttctggcgctgtccggcggcggtggcggcggcagt
tccggcgcagctgctgcggaagcgccacctcccgccgtggaacctccgcgcaatgaatgg
ctgatgaccgtcacgcctgctgccggcgtcttcctacccaatgcaacggtcaagctgatc
gccaagaagctcatggctgacggcagctggcaggaagtggccaatagcaccgcggtcgac
gccagtggccgcatgacgctcaaggtcgccaaaggcagcttgactgccaaggatgtcatc
cgactggaactgagcgataccgaccccgccggcaaggactacaaggacgaggtggcggga
gcgcaaaccttgggcggtctcaagctggaagcctatgtgggcgcatggaacgccgacatg
gccgtcaccatcaacccgttcactaccatggtcgtgcacaagctggatgaggcggctaat
gcggctaatgcagggggcgctcgtgggaatagtgctgttgtgaatgacgcgggtgctccg
ggcagtgctcctggtgcgggtggcgcgggtgctccgggcaatgctcctgttgcgggtggc
gcgggtgctccggtcaatgctcctgttgcgggtgacgcgggtgctccggtcaatgctcct
gctgcgggtggcgctggcgctccggtcaatgccgccgctgccaatgccccgaccaccccg
gcctacggcgccgacgccgccaagttcgaggcggcgatcgccaaggccttcggcatccag
tctggcgacctgctccataccattcccatcctgctcaatggcaggcccgttgccggcgcc
tccgccgatgcgatcaattacggtctggcgctgggcatcctctccggcatgacccaggcc
cagcgtgaggctggcgccgccaacccgctgcaggccgccctggatctgttgaagtcggcc
attcaggtcaatggcggcaatgtcacgttcgcgctggagactctccgcaagtccctcatc
accggtagcaacatcgatggcggcctggatgccggtgcggccaagctgcacgcagcggcg
gtggaggacggcaacaacagcaccagcaccatcaagggggcccaggttccctacctgcaa
gtcgatacgacgcaagagaagccctacgccggccagaccaagcctgtctgggccgacgct
gctgtcagtttttccagcttcaccaacggtggcttgagcctgaaggtggctccggccgcg
tcggccaaggtcggtgatcagttgctggtggaatttcttccgctggacaccaccaatggc
cggctgcaaggcggcggggcaaagccgtttacgttcaagtacacctacaccgagaaggat
gccgaagccgttcgcctcagcgcgggcgattccagcaacaacggcatcggcagcttcacg
ttggtggtgcctaccttcgatgagtccgcccaattcagtgccaccaggaccagcgtcttg
cgtactgctacggcgtcctccacccccggttcggcgccctcgttgctcgatgttaataac
gacggcgtctatagaatcaacaacagtgagtacggctatcagttgcgcgcttccggtgcg
gtgatgggggctttcgccagtggcgcgaccctcaacatcagcactcagtccatcggagtg
gaagccgcccccaacgccaccggcggcgtactgttcaatggctccggagttcccggtgcc
agtaacaccgtccggttcagcgtcgccatcgggcagaagatcaactggagcggcgccgat
cccacgctggaggtgagggtggccaatcaccctacgccactggaggccaccttggtgtcg
ggtcgtaatgcagatgtattgacattcaagctggatctgaccaagcccgcaaacaagaat
ctggaaggcgcattgagcgtggccgcacatgcgcttaaattctctccggacactatcttg
agtgatgttcccggcaataccttgttcaagactcaggatggcaggagctggattgatagc
aaggggagcgctgtcgcggatatcgacgcggccctgaacgtcaatacagcacttcccaac
agcggattctccattgacacgacgccgccgcccacacctcgcctgaccttgccaggtcgt
ccggcgttcgacgctaacaactatgcccctgacaatgccaagcccgtgagcggcagtctt
aacgccgccccggcgggcgcaaagtttggtgaacacgcggtagtgaccaacgagccacgg
attcccttcaaggtgagtttcgacgcggcagataacgctcaactgaagcagggggacagg
gtcaagctggtggtcgatttcccaggtactcaaggccgtgaaattgcatcagcctcgctg
agcaaggatactggcggcaattggacggcgacctttgatccggccagctacagcgaaaat
atccagcaactcatcacccggtttaaaacaacgaccgatctagacaaggtcacgttctcc
gcagtcgtcgtggaccaagccggtaaccagagcgtaccgggcagcttgaagaactttgcc
gaaggtggcgtagacaacatctggatcgacctgaaagcaccagcgaaacccagcctggtc
gccctcaacagggctagcgacaccggccgcgacgatgctccggacacccgcgctgacggc
atcacttcgatggccaagccgaccctccagatcgagggtggcgaaccgggcgggtttgcg
cgcgtctatgccaatgccgacgggacgggcctgttgggcgaaggacgcatcagcaatgga
cagagtctgacaggcggcagcgtcaacagtgcttctgtggcgctcaccggaggcaccggc
ctggtcaacggcgccaatacggtgtacgtgcagttgatcgatgccgctggcaacaagagc
gagatccaatcgaagcagattgaagtcctgctcccgctccccatggacgcaagggcggat
atcgccctcaccagcaccgccccgcacaacggcttctacgtcacaggcgatgtgatcgag
gtccaggtcaccttcgaccgcgaggtctacctgaagcagggtaaggtgaccgaccagctt
tatgtgaacctgatccaggatggcaccggcgcgaatgctgccaagatcttgaaagcgact
taccaaagcggcctgggcaagggtactaccgatcccggcagcaaggtcctgaccttcaaa
tacacggtgggggctggtgatgatgcaccagctggcgtgaagtacaaggttggggacctg
atcaacgtaggccacgtgctggaagacaaggccggcagcgatgttcctgggatgagcaag
ccatatactggcgccggcctgaccatcgacaccgtcgcccccccgtcccggcactcacgc
tggatgccgatttgttatcccacgaggcacgcgccacggcagagggtagccaagggccag
ccgctgaaggtgaggggcagtgaggtaggctccaagctggcaatcaagttgaccaacgcc
agcggcgtagtcgagaacctcgatccattgactgctaccggcgccggccagaccatcaac
ctgaccgacgtgcagatcgccaagctgggcgacggcctcatcacggtcaccgccatggcc
agtgatacggcgggcaatgtcagagcagcagccgagacgaagttcacgctggacaccacc
gcgcccgccgtgagcgccagcgtcacggcgacgggtggcggtcagcctcccgccgtcacg
aaagagcagatcagcttcgtggtcaccttcaacgaaaagctgcgcgtccccgtcacaatc
gacaacttcaccgccaccaacggcacggtcaacaaggtggaagccgtgaccggtgccggc
aacacaaacgccaatagctataccgtcctcgtgacgcccaatcccgacatgcctgccggc
aacaaggtcgagctcaaactcaaggccaatggcgctacgcccgttctggacgtggccggc
aatcccgccgaactcggcgcggtcatcgcgtcccaggccatcgatacgcggggaccgacc
gtcatctccgtgcctgctgacaatgcgccgcccgcgccaccgacgatgaacaaggatatc
gtcttcaacgtccgtttcgatgagatgggctctgtgtcccagatgggcaacatcggcgta
ggcaacttcaaggccatcaatggcaaggtcaccaaggttgagccggtgggagcgtccagg
acggagtacaacgtcacggtcaagcccaatgccgagctgaccggcaacagcaacgaagtc
cagctgaatttctttgccgtggccgacatccggatggggcagggcagcgccggcgtcgcc
gatagcctgggcaatgcggccagggatcagcccaacatcgcccgccagatcatcgatgtc
cagcagcccagcatcaccgcagacggtgtctccgtgagcagccgctcccttgccagcggc
aaccccgataagcctggctacgtccatgccggcgacaccgttcgcttggccgtcgtcttc
gacgaagccgttaccgtcagcggcacgcccaagctgaacctgcaagtcggggccaacacc
cgtagtgcttcctacaagacgcttagcaccgacggcaagaccgcctacttcgactatgtg
ctgacagccgccgacacggcgaccgatggcatctccattccggctaacgcgctgcagttg
cccaccggggcgagaatcactgacctggctggcaacgcggccaaggtggacagcagtgtc
gtggcgctcaatcctgcctacaaggtcgataacagcgcacctaccctgaccgaggtcaag
gtcagcgagatgaccgctgacaatggcagcggcatctacaaggctggctccgtcattacc
gtacaggccaagttcagcgagccggtcgatatcaatacgaccggaggcgcgcctcggatc
aagctcacgataggaggtgatgaacgcacggcagcctatgtggatagggtgcccggcgat
gcgccggacgtcctgaaattcagctacaccgttctctcgggtgacaacgctccggcaggc
gtcgccatcccggcgtcgccgctcgttctcaatggcgcgagcattactgatgtgtccggc
aatcgcgccgtgctcacgctgggtggcgtacagcccaatgcttccttcaagatcgacact
accgcccccaccgtcaccgccgtggcgatagagagcgccagcgtcagcggcacggaaggc
aactatcgtgctggcgacgtcatcaccgccgtggtcacctttagcgaagaggtcaagctt
gcgcccaacgcccaggccagcctgaatctgatggtcggtggcgatagtcgcaccgccacc
ttggtcacccctacggccaatgcagcatctaacactctgcgtttcagctataccttgcag
tccgctgacgccgatagcaatggcatctccatcgcccccaacagcctggctcttgccggc
gtgaccgacaaggctggcaacgccgccgcaccggcgcatgtggccgtggccgacaacccg
ttgttcaaggtggataacgctgcaccgaccatcctcagcttcagcactaccacgcctgac
ggcacctacaacatcggcaaggtgatcaacctgcgcgccacggctagtgaggagctgcgc
cccggcgcgaagatcacggtcacgctcgacaacggcgacaccgccgtgctcacccgtgac
gccagcaatcggaccctgctggaaggcagttataccgttgtcggcggcaagccatccacg
aacgacctgacggtgaccagctttacacaggccgccaaagacctggccggcaacgacctg
ctgactaccatgcccgcagccggcaagaacctgggcgacaaccgcgccatcgtgctcgac
gccatgatgccgccgcagccgaccatgttcagactcgacgccgccagcgacggtggcgcc
agccccaacgatgggctcatcagcgaggtcttgccgaccttccatttcgacgggctggtc
cgtggcgccacggtgacggtgaccggtaccttcaagggtgttacccagaccctgctgcaa
ttcaccgccagcgccaccgcgcaagatcagaaactcaccacgccgctgactgacggcgtc
tacaccgatatctcggtgatccagacctcgccctccggcaatgccagccagccgcgcttg
ctgggcaacgtgaccacgcctggcagcctggaactgtccaccgccgcgccgggcgtggcg
agccagctggtcttcgatatcgaccaggatttgcagaccgaggcgtccctggagacaggt
gcgccagccaatgcaccgcgcgacttcatcacgctgatccgtactcccaagttcaatttc
cagggtggcaatgacggtgaggtcgcggtgctgttccgcgacaccaacggcaataacatg
gtggatgccggcgagcaggtgctgggccgccagatcatcggtgtgaccaatgccaccaac
taccgccttcagcccggcactagcgggaatggcctgaacggtcactacgtcgaggtcgct
gccgaaaacgcactgggcaatggcccctataccgatatcaagctggccttgcagagcaag
tacgggacctatggcacggccgtgccgatggcgcggggagcaaccagcggctcgggggcc
ggcggtatcacggtgatcaataacaagccggttcccgacattaccggcgtcaccaccaat
gcgaccgctggcgagagcagcgccgccaccatgagctttaacgtcagaggcggtcagact
ggcgcacgcatcatcatcaaggcggaccgcttggatgacaacggcacgctcatcgcggcg
cagcaagaaattggccggggcgtaccggatggcaatggcgtgctcacgcttcaggttggc
cagttcaatggcagctatggcaatttcaaggctactcaggattatgcggggaggatcagt
aatgtcgctgtcacaacggtgactaacaccgggccccaaccgctgggaaccatcacctgg
gaccatctgccgatctcggtcactgcctcgaccgaccttgctgcgaattcccgtcccggt
acgcctttcacggtgaagttcgacttcagcaaagcacctaacggctttgcacaggatgat
attgccgtgaccggtagtggtgtcttgtctgcatttgctcccgtgctcggttctaacaac
aaacggtattccgccaccttcacgcctacggatgcaacggtcacccgcgccacgttccag
gtgaaggatggctcctacaccgagccgaacaaccagtccggcgcggccagcaacaagctg
gagctcgtcttcaacagggccggcgcagtggcagtgtcgggagccagcgccgatggcaag
ccgcagttgggcgacaccctcacggccactgtcagtgatcccgacggcgtcaagagcgat
gtgcctgttgcctatgtctggaaggccggtggcgtcgccattgtcggcgcgaccggggcc
agcttgaggctcaccgatgcgcaaatgggcaaggcgatcagtgtcgaggcccgttatacc
gacaacctcggcttggctgaagtctcgtcctcggcaagcacccctaacgtgaccggaccc
aatgcgccgggcgtgctgaagttcacggtcaacggccaggaaacctccgtcgtgcgcctg
ggcgataacgtcacggcagtcttgagcgatggggatggcttcgatcctgcgcgggtgacc
tacagttggcggggcgagaggctggcacgtccgctgaagggcgccgataatgccaccgga
agcacgttccagatcgctcaagatgaggatgtacactcctttggaacgactcagattctg
gttcaggcggagtatacagatctgcatgggacatccgagcgtgtttcgggatatgcctac
ttgaaatatccccagcgtcccggcacggtggtcttcgatgcactgaatccgccgaacacg
ccttaccgatcaggcgatgagcttcacgcgatcgtcaaggacgacaacggtaccggcaat
ggtggcgtgacctacacatggtatgccaatgacacggtgatccccgggcagaccgggtcg
cacttgcagttgatcgatgcctatcgcggcaaggccatcaaggtgagcgtgagctacacc
gatggcgagggtctgctggaaacgccgaccagccaagctatccgtgtcgagcaacccaac
aacaacgcaccggttggcgccgtcaccctcgcaggctcaggcgagctgggtacgacggtc
acggcgtccaataccatcaccgatgccgacggaatgcccggccagatcacctacaagtgg
ttcgccagcggcgacgccgccaccaagggcgatctgatcaccgcgccggtgttcgtcaat
aacgactccagcaagctgctgatcaccagcgacctggtgggcaagtccttgaaggcggag
gcgaattacaccgatggccagggcaccgacgagaaggtgctcgccgctacggccaagacc
gcgggctggatgacctccgtcacgctgggcaatctcagctacgcccagttcgaggcgcaa
ccccaggtcgtcagtggcgccaagctgatctcccgtcatccgaccagcaacgtcttcatc
ctcgacgtcaacggcgatggccagatcaccgctgccgacgccaccacctacatcaccagc
ctggacgccaacggcagcatcagcttcaccaccgaggccggccgcggcaaggccaccttg
ttggccgcgaactcaccgctgtgggcgacattgctgccccagcctgcggaatggggaccg
gccaatggcgtctttggcttacccgcccggaatggccagccagcggtgaccggcggcgat
ttctggacttccacggcgggtacggcggcagattcccatcaggtatggagcaagagcggc
gccgccgatggcaccccgggggcctatgagcagagcaatgcctcgtacatgaacgatccc
aatcgcctgcacttcaacgtcttccaggtcagcgtcctgccagcgtga
DBGET
integrated database retrieval system
