Herbaspirillum seropedicae SmR1: Hsero_3159
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Entry
Hsero_3159 CDS
T01268
Name
(GenBank) uracil DNA glycosylase protein
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hsero_3159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3159
Enzymes [BR:
hse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Hsero_3159
DNA repair and recombination proteins [BR:
hse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hsero_3159
Prokaryotic type
Hsero_3159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ADJ64641
UniProt:
D8J172
LinkDB
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Position
3618226..3619026
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AA seq
266 aa
AA seq
DB search
MPAPSASLPAALADLIPTAHPSWHAALRAGLQAIAQADPVYLDVLATDHYLPTEGRLFAA
FQQPMDRVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSEKGLSKQVNRATSLRNFMKML
LVADGRVQAGQTSGDALADVAAQAQADVAGTIQTLADLQDNLTAQGFLLLNASLVFRTHV
APVKDAKAWKPFFETVLRALAEHGASQGKTLPTLVLWGKIAEQLDSLPLVQAFPRAVAEH
PYNLSFIEHSGMQALFGAMHLLDKRH
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccttctgcctccctgcccgccgcgctggcggacctgatcccgaccgcccat
ccctcctggcacgccgccctgcgcgccgggctgcaagccatcgcccaggctgaccccgtc
tacctggacgtgcttgccacagatcattacctgcccaccgaaggccgcctcttcgccgcc
ttccagcaacccatggaccgcgtgcgttacgtgctggtgggcgaaggcccctacccgcgc
gcggccagcgccaccggggtgtgcttcatggatggggcggtcggttcgctatggtcggaa
aagggactgtccaagcaggtcaatcgcgccacctcgctgcgcaatttcatgaagatgctg
ctggtggccgatggccgcgtgcaggctggacagaccagcggcgatgcactggcggacgtc
gccgcccaggcgcaggccgatgtggccggcaccatccagacgctggccgacctgcaggac
aacctgaccgcgcaaggcttcctgctgctcaacgccagcctggtgttccgcacccatgtc
gccccggtcaaggacgccaaggcctggaagcccttcttcgagaccgtgctgcgggcactg
gccgagcatggcgccagccagggcaagacgctgcccacgctggtcctctggggcaagatc
gccgagcagctagacagtctcccgctggtgcaggccttcccgcgcgcggtggccgagcac
ccctacaacctgagcttcatcgagcacagcgggatgcaggcgctgttcggcgccatgcat
ctgctggacaagcgccactga
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