Herbaspirillum seropedicae SmR1: Hsero_3183
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Entry
Hsero_3183 CDS
T01268
Symbol
ddpA1
Name
(GenBank) ABC-type dipeptide transport system, periplasmic component protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hsero_3183 (ddpA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hse02000
]
Hsero_3183 (ddpA1)
Transporters [BR:
hse02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Hsero_3183 (ddpA1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
DUF2989
Motif
Other DBs
NCBI-ProteinID:
ADJ64665
UniProt:
D8J196
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All DBs
Position
complement(3640716..3642254)
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AA seq
512 aa
AA seq
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MNALHKSLLGWSRCAVLAAGAMTAVAAHAGKANDTLVYASDSEVENISQYHNNLREGVIL
AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN
YAVSPESKAVTRQNTDWIKSVDKLADYKVRINLKGPFPAALEYLAGPLPIYPAAYFKKVG
LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQGQPTIGNIKFVVIPDPETRAA
QLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFITLDTTGTSAPNSPFKDVRVR
QAVNHAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKAKELLAAAGYP
NGFDTDIYAYREREIAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS
MNDTSAFAGVYFKGGADDITKDPQLQQYLQTADTSIDPAVRKANYSKAQELISKQAYVAP
MFSYSTYYAYNAQLNFQGYPDELPRFYEASWK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcactacacaaatccctcctgggctggtcacgatgtgcagtgttggcggcaggg
gccatgacggcggtcgcggcgcatgccggcaaggccaacgacaccctggtctatgcctcc
gacagcgaagtcgagaacatcagccagtatcacaacaacctgcgcgaaggcgtgatcctg
gcgcacctgatctgggacacgctgatctaccgcgaccccaagaccaacgaatacaagccg
caactggccaccgcctggaagtgggagtcgcctaccgcattggtgctggatctgcgccag
ggcgtgcaattccagaacggcgacaagttcagcgccgatgatgtggtgttcaccttcaac
tatgccgtctcgccggaatcgaaggcggtcacgcgccagaacaccgactggatcaagagc
gtggacaagctggccgactacaaggtgcgcatcaacctgaaaggcccgttccccgccgcc
ctggaatacctggccggccccttgccgatctacccggcggcctatttcaagaaggtgggc
ctggaaggtttttccaaggcgcctatcggcaccggtccctacaaggtcaccagcgtgacc
ccggggcagggcgtgacgctggtcaagaatcctggctacttcaaggatagtccgcaaggc
cagcccaccatcggcaatatcaagttcgtcgtcatccccgacccggaaacccgcgccgcc
cagctcatgaccggcgccatcgactggatctggcgcgtgccgccagaccaggccgattcg
ctcaagaccaatcccaagctggccgtgcagagcggcgagaccatgcggatcggtttcatt
accctggataccaccggcacgtcggcgcccaattcgcccttcaaggatgtgcgcgtacga
caggcggtcaaccatgcgatcaatcgcaagggctatgccgacaacctcatgcgcggcggc
agccagccggtctataccgcctgcttccgcacccagttcggctgcgacagcaatgccgcc
atcaagtatgactacaacccggccaaggccaaggagttgctggccgcggccggctatccc
aacggcttcgacaccgacatctacgcctaccgagaacgtgagatcgccgaagccatcatc
ggcgacctgcgcaaggtcggcatccgcgcacgcctgcactacatgaagtttgccgcgttg
cagaccgagtaccgcagcggcaagacgccgatgagcttctattcctggggttcgttctcg
atgaacgatacctcggcctttgccggcgtctacttcaagggcggcgcggatgacatcacc
aaggatccgcagctgcagcagtatctgcagacggctgatacctcgatcgatccggctgtg
cgcaaggccaactacagcaaggcgcaggagctgatctccaagcaggcctacgtggcgccg
atgttctcctattcgacctactacgcctataacgcccagctcaacttccagggttatccg
gatgagctgccgcgcttctacgaggccagctggaagtaa
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