Herbaspirillum seropedicae SmR1: Hsero_3458
Help
Entry
Hsero_3458 CDS
T01268
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hse03019
]
Hsero_3458 (hrpA)
Enzymes [BR:
hse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Hsero_3458 (hrpA)
Messenger RNA biogenesis [BR:
hse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Hsero_3458 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
DUF5669
SLFN-g3_helicase
ResIII
TsaE
SRP54
AAA_25
AAA_16
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ADJ64938
UniProt:
D8IPP1
LinkDB
All DBs
Position
complement(3967282..3971349)
Genome browser
AA seq
1355 aa
AA seq
DB search
MSVTKAPTPAPAAQPQKNPQQERARGQRDARGPRRTDSAAEAAPAPAPLRNPLPPVTFPE
ELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAA
SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII
IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGREVKGEIVPAPVI
EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD
ELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR
IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV
AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA
DGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV
SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN
FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQY
LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW
GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAP
FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAAD
PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN
QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKAFGRGNLI
DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA
RQQFQKLAEQVAIAPREDEDNAAPSPAAATSKGGTSAAPAAAAPASVGEYSNLTSWSFGE
LPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKE
QLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG
KARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY
GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRADPKMTEFR
WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaccaaagcccccaccccagcccccgccgcccagccgcagaagaacccgcag
caggagcgcgcgcgcggacagcgcgacgcccgcggtccacgccgcaccgactctgccgcc
gaggccgcgcccgcgcctgcgccattgcgcaatcccttgccgccggtgactttccccgaa
gagctgcccgtctctggccgccgccacgagatcgccgcggcgctgcgggcgcaccaggtc
atcatcgtcagcggcgagaccggttccggcaagaccacccaattgcccaagatctgcctg
gagctgggccgtggagaaaagggcctgatcggccacacccagccgcgccggatcgccgca
tcctctaccgccaaacggatcgcgcaggaattgaattccccgccgggcgagctggtcggc
tacaaggtgcgcttcaacgacacgctgtccaagggcgcgtggatcaagctgatgaccgac
ggcatcctgctggccgagacgcagaccgatccgctgctgcgccagtacgacaccatcatc
atcgacgaggcgcatgaacgcagcctcaacatcgatttcctgctgggctacctgaagcag
ttgctgcccaagcgtcccgacctgaagatcatcatcacctcggccaccatcgatgccgac
cgcttcgcccgtcatttcgggcgtgaggtgaagggcgagatcgtgccggcgccggtgatc
gaggtctcgggtcggctgtatccggtggagatccgataccggcccatcgacaatgccgac
cgcagcggcgtctccaccgaggtggcgcaggcgcgggcgcgcgccgaggggcgcgccagc
caggcccagaaggaccgcgagcagcgcgacctgatggacgccgtggtcgatgccgtggat
gaactggcacgcatcggcgcgggcgacgtgctggtcttcctccccggcgagcgcgaaatc
cgcgatgccgccgaagcgctgcgcaagcatcatccgccgcatgtggaaatcctgccgctg
tttgcgcgcctgtccgcgcaagagcaggagcgcgtcttcaagaccagcaatgcacgccgc
atcgtgctggccaccaatgtggccgagacttcgttgaccgtgcccggcatccgctatgtg
gtcgatgccggcctggcgcgggtcaagcgctacagctaccgcaacaaggtcgagcagttg
cagatcgagccggtggcgcaatcggcggccaaccagcgcgccggtcgttgcggccgggtg
gcggcgggtgtgtgtatccgtctgtatgacgaacaggatttcctgcagcgtcccaagttc
accgatcccgaaatcctgcgttcgtcgctggcctcggtgatcctgcgcatgaagtcgctg
catctgactgatgtggagagcttccccttcatcgaaccgccgctgggccgcgccattgcc
gacggctaccagctgctgcaggaactgggcgcggtggaagagcagggcggcgtgaaccgc
ctgacgccgctgggcaagcagttggcgcgcctgccgctggacccgcgcgtgggccgcatg
atcctggccggccgcgacaatgcctgcctgaccgaactgctgatcatcgccgccgccgtg
tctgtgcaagacccgcgtgaccggcccatggatgcgcagaatgcggccgacaacgcccac
aagaaattcgccgatgaaaagtccgaattcgccagctacctcaagatctggaaatggttc
gaagacgccatcgcccacaagaaatcgaaccggcaattgcaggagcattgccgcgagaat
ttcctctcgcaactgcgcctgcgcgagtggcgcgatgtccattcgcaattgctgaccatc
gtcaaggagcagggctggcgtctcaatgaagcccccgccacctacgatcagctgcacttg
gcgctgctgacgggcctgctgggcaacgtcggtttcaagagcgaggacgatgcgcaatac
ctgggtgcacgcggcatcaagttcaacatctggcccggcgcgcatctgaccaagaagccg
gggcgttgggtgatggccgccgagctggtcgatactgcccgcctgtatgcacgctgcgtg
gccaacatccagcccgaatggctggaaaagctggggggccacctgttgaagaaatcctgg
ggcgagccgcgctgggaaaagcgcgcggcccaggtcaccgcctccgaacgcgccacgctg
tatgggctggtggtgtacagccagcgccgcatcaactacggcaagatcaatccggctgaa
gcacgcgagatcttcatccgcgacgccctggtcggcggcgacttcgagacccgcgccccg
ttcttcgcgcacaaccagaaactggtgcgcgagatcgagaatctggaacacaagtcgcgc
cgtctggatgtgctggtggacgatgagctcatcatcggtttctacgacaagctgatcccg
catgacatctgcaatggcgtggacttcgagaagtggcacaaggaggccactgccgccgat
cccaagctgttgtacctgaaccgtgacgacctgatgcgtcacgaggccgctggtgtgacc
acggagctgttccccaagaccatgaacgtggcaggcatcgccatggccttgagctatcac
ttcgaacccggcgctgcccgtgatggcgtcacgctgaccgtgccgctgtatgcactgaac
caggtctcggcggatcgctgtgaatggctggtgccgggcatgttgaaggagaaggtgcat
ctgctgctgaagtccttgccacagaagctgcgtcgccattgcgtgccgctgcccgactac
gccgcccgcttctgcgagcgcatggaagagcgcaaggcctttggtcgcggcaacctcatc
gacgccatcattgctgatatccgcgagcagatcaccctgctagtcaagcccagcgatttc
aagcaggaaacgctgtcagcccaccatgcgatgaacttcaagatcgtcgatgagcatggg
cgccagctggagatgggccgcaacctcgccgccctgcaagccgagttcggcgggcaggcg
cgccagcagttccagaagctggccgagcaggtggccattgctccccgcgaggacgaggac
aatgccgcgccttcgcccgccgccgccaccagcaagggcgggaccagcgccgcgccggct
gctgctgcgccggcttcggtaggcgaatacagcaacctcaccagctggagttttggtgaa
ttgcctgagttgctggagattacacgcggcagcggtaagcaggcgcagacgctgatcggt
ttccccgcgctggtggaccgcaagacgcattgtgacctggaagtctttgatgatccggcc
gaggcggcgcgcttccactatgccgggctgcgtcgtctgtttgccttgcagatgaaggag
cagctcaagtacctggaaaagaatattccgggcctgcagcagatgggcatgcaattcatg
gccctgggttcgcaggaagaattgcgcgaacagatcctcaatgccggcctggagcgcgcc
ttcctgcaggacccgctgccgcgcaacgccgacgagttcaatcgccgccgtgatgaaggc
aaggcccggctgggtttgctggtcaacgagattgcccgcctgtgcggccagatactggcc
gagtaccatgccctgcccaagaaactgcaaggcatcaaggcgcacgcgcaggcagcggct
gacatgcaggcgcagctatcgcaactggtgggcaagcgtttcgtggccgagaccgattac
ggcaatctgagtcactatccgcgttatctgaaggccatcaacgtgcggctggacaagctg
cgcgccgatccggcacgtgatacacgattgctggcggaatggaattcggtggcgctgccg
tatcaacgcgccctgaaggaccgcgccggcagggcggatccgaagatgaccgagttccgc
tggatgctggaggagttgcgcgtgtcgctctatgcacaggaattgaagacgccgatgccg
gtgtcggtgaagcgcttgcagaaggtttgggagagtatgcagcggtga
DBGET
integrated database retrieval system
