Herbaspirillum seropedicae SmR1: Hsero_3555
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Entry
Hsero_3555 CDS
T01268
Name
(GenBank) ATPase protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3555
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
Hsero_3555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HerA_C
DUF87
TrwB_AAD_bind
AAA_30
ResIII
AAA_22
AAA_10
T2SSE
FtsK_SpoIIIE
CbiA
AAA_19
AAA_16
YidB
AAA_6
AAA_28
AAA
nSTAND_NTPase5
Hydrolase
AAA_7
TraG-D_C
Motif
Other DBs
NCBI-ProteinID:
ADJ65034
UniProt:
D8IQC2
LinkDB
All DBs
Position
complement(4077306..4078958)
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AA seq
550 aa
AA seq
DB search
MIHPLPIATHSGGQLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSEIGVPVFMADVK
GDLSGLGKAGSASPKTAARLAQLGLPEPAWAAAPVAFWDVYGEQGHPVRATVSDMGPLML
ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV
GAIQRGLIGIDEQGGDRFFGEPMLNIEDWMQTDAHGRGVINILAADRLMNAPRLYSTFLL
WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV
TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVTAAAETFRPNPMLNTAQAITELGVGE
ALVSFLDEKGRPNMVERGYVLTPASQIGPLSQAERRALIASSLVAGVYEQAIDRESAYER
LKGRAVQQPPAAPQSVPQSAPAPSPVDDNAWGASAGRSAPGPASPSRPSGGTRIPPQQSQ
PQPQPIPQQGEGGGLGDLLKDAAGGIFGNGGNRRSDSPLQAMVKSAARSIGSQVGRELIR
GVLGSLMKKR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgattcatcctcttcccatcgccacccattccggcgggcaactgtgcctgctgccgcaa
ctggccaaccgccatggctgcatcaccggcgccaccggcaccggcaagacggtcaccctg
caggtgctggcccaggcgctctccgagatcggcgtgccggtcttcatggccgacgtcaag
ggcgatctctccggcctgggcaaggccggcagcgcctcgcccaagaccgctgcgcgcctg
gcccagctgggcctgcccgagcccgcctgggcggcggcgccggtggccttctgggatgtc
tatggcgagcagggccatccggtgcgcgccaccgtctccgacatggggccgctgatgctg
gcgcgcatgctcaacctcaacgacacccagcagggcgtgctgcaactggtgttcaagatc
gccgacgaccatggcctcttgctgctggacaccaaggacctgcgcgccatgctgcagcac
gtgggcgagaacgccgcccagttcaagaccgaatacggcaacatctcggcggccagcgtg
ggcgccatccagcgcggcctgatcggcatcgacgagcagggcggcgaccgtttcttcggc
gaacccatgttgaacatcgaggactggatgcagaccgacgcccacggacgcggcgtcatc
aacatcctcgccgccgacaggctgatgaacgcgccgcgcctgtattccaccttcctgctg
tggatgctctcggagctgttcgaacacctgcccgaggtgggcgacctggacaagcccaag
atggccttcttcttcgacgaagcccacctgctcttcgacgaagcccccaagccactgctg
cagaagatcgagcaggtggtgcgcctgatccgctccaagggcgtgggcatctatttcgtc
acccagaatccgctggatattcccgacaccgtgctgggccagctcggcaaccgcgtgcag
cacgccctgcgcgcctacaccccgcgcgaccagaaggccgtgacggcggccgccgagacc
ttccgccccaatcccatgctcaataccgcccaggccatcacggaactgggcgtgggcgag
gcgctggtgtccttcctcgatgagaagggccggcccaacatggtcgagcgcggctacgtg
ctcacgccggcctcgcagatcggcccgctcagccaggccgaacggcgcgcgctgatcgcc
tcctcactggtggcgggcgtctatgaacaggccatcgaccgcgaatcggcctatgaacgc
ctgaaagggcgtgccgtccagcagccgccagccgctcctcagtctgtgccgcaatccgcg
cctgcgccatcaccggtggatgacaatgcctggggcgcctcggccggccgcagcgccccg
ggacccgccagtccctcgcgtcccagcggcggcacgcgcatcccgccgcagcaatcgcag
ccgcagcctcagcccatcccgcagcagggcgagggtggcggactgggcgatctgctcaag
gatgctgccggcggcatcttcggcaacggcggcaaccgccgcagcgattcgcccttgcag
gccatggtcaagtcggcggcgcgcagcatcggttcgcaggtggggcgtgagctcatccgc
ggcgtgctgggctcgctgatgaagaagcgttga
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