Herbaspirillum seropedicae SmR1: Hsero_3571
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Entry
Hsero_3571 CDS
T01268
Symbol
dnaE
Name
(GenBank) DNA polymerase III (alpha chain) protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03430
Mismatch repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_3571 (dnaE)
03430 Mismatch repair
Hsero_3571 (dnaE)
03440 Homologous recombination
Hsero_3571 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_3571 (dnaE)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3571 (dnaE)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hsero_3571 (dnaE)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hsero_3571 (dnaE)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hsero_3571 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
ADJ65050
UniProt:
D8IQD8
LinkDB
All DBs
Position
complement(4095024..4098482)
Genome browser
AA seq
1152 aa
AA seq
DB search
MTTPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGK
GVKPIAGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEW
LDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGAFYLELQRAGQ
ANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVRRFN
EQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPDGMTIDDFLVA
QTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRV
IQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLA
DAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG
GDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDLAKLPLDDR
PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKH
GEAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAK
HRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAF
MAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLG
AVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAV
LQASVNLAWESAEQAEKSANQVSLFGGDDSDLEAPLEYVQVPPWSDKQRLTEEKGALGFY
LSGHLFSAYEKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTG
VIEATIYNELFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRM
VVSINKAIDPNHLRDTLSAHRQEQGLPFVMRYQQADAACEVVLGDAWRINPSDSLQSTLV
ASFGKEAVVVEY
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgactaccccgcaatttgtacacctccgtatgcactcggagtattccatcgtggacggc
ctggtgcgtatcgacgacatcgtcaaggccgctgccaaggatggccaagccgccctggcg
gtgaccgacctcgccaacctgttctgcatggtgcgtttctacaaggaagcgcgcggcaag
ggcgtcaagcccatcgccggctgcgacctgtggatcaccaacgatgccgaccgcgaaaag
cccttccgcctgctggtgctgatcaagaatcgtcacggttacctgcaactgtgcgaagta
ttgtcacaagcctggctcaataaccagtacaagggccgcgccgaagtgcgcatggaatgg
ctggacgcgctgcgccaccaggagggcggcaatggcttgatcgccctgtccggcgccgcc
atgggcgacatcggccaggccatcgacaacggcaacctggcccaggccgaagcctgcgcg
cgccgctgggccgagatcttccccggcgccttctacctggaactgcaacgcgccggccag
gccaacatggaagtgcaggtgcgccagagcgtcgccctgggcgccaagctgggcctgccg
tgcgtggccacgcacccgatccagttccagagcccggaagaattcatcgcccacgaagcc
cgcacctgtatcgccgaaggcgagatcatggccaatgcgcgccgggtcaggcgtttcaac
gaacagcaatacttcaagtcgcaggccgagatggtcgagctgttcgccgacctgccgggc
gccgtggccaacaccgtggaaatcgccaagcgctgcaacctcgtgctgcaactgggcaag
ccgcaactgccggatttccccaccccggatggcatgaccatcgacgacttcctggtggcc
cagaccaaggccgggctggaagtgcgcttgaaggaactgttccccaacgaagccgagcgt
gagaagcagcgtccgcgctatgaggcgcggctggagttcgagaacaacaccatcatcaag
atgaagttcccgggctacttcctgatcgtggcggacttcatccagtgggccaagaacaat
ggcgtgcccgtcggccctggtcgcggttccggcgccggctcgctggtggcctattgcctg
ctgatcaccgacctggacccgctgcgctacaacctgctgttcgaacgtttcctgaacccc
gaacgcgtctcgatgcccgacttcgacatcgacttctgccaggaaggccgcgaccgcgtg
atccagtatgtgaaggatcgttacggcaaggaggcggtctcgcagatcgccaccttcggc
actatggccgccaagggtgcggtgcgcgacgtgggccgcgtgctcgacctgggctacaac
ttctgcgatggcatctccaagctgatccccttcaagccgggcaagctggtcaccctggcc
gacgccatcgaggaagagccgctcttgaaggaacggctggagaacgaggaagaggtcaag
cagctgatgggcctggcccagcaggtcgaaggcattgcccgtaacatcggcatgcacgcc
ggtggcgtgctgatcgcgcccggcaagctgaccgatttctgcccgctctatacccagggt
ggcgactccggcgtggtctcgcaatacgacaaggacgacgtggaagcggtcggcctggtg
aagttcgacttcttgggcctgaccacgctgaccatcctcgaccgggcggtgcgctacatc
cgcatgctcgatccagccatggccgatttcgatctggccaagctgccgctggacgaccgg
ccctcctacgaactgctgaccaaggccaagacggtcgccgtgttccagctggaaagccgc
ggcatgcaaggcatgttgaaggatgcgcgtcctgaccgcttcgaggacatcatcgcgctg
gtggcgctgtaccgtccgggtccgatggacctgatccccgacttctgcaagcgcaagcac
ggcgaagccttcgactatcctgacccgcgcaccgagggcatcctctccgagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcaggtcatcggcggctattcgctg
ggcggcgccgacttgctgcgccgggcgatgggcaagaagaaggccgaggaaatggccaag
caccgtgaactgttccgcgaaggcgcggccaagaacgggctggaccaggccaaggccgat
gaaatcttcgacttgatggaaaagttcgccggctacggcttcaacaagtcgcacgcggcc
gcctatgcgctgctgtcctattacaccgcctacctgaaggcccatcaccctgccgcgttc
atggccgccaacttgtcgctggccatggaagataccgacaaggtcaagatcctgatcgaa
gacgcgatcgatatctgcaagctggccatcctgccgccggacatcaacaagtccgactac
cgcttcatgccggtgggcgagccgggcaagaaggccacccagatccgctatggcctgggg
gccgtcaagggcgccgggcagaacgccatcgaagccatcctggaagcgcgcaagagcggt
cccttcaaggacctgttcgatttcgccaagcgggtggacaagaagcagatcaaccgccgc
accatcgattcgctgatccgggccggcgccttcgactgcttcaaggtcgaccgcgccgtc
ctgcaggcctcggtcaacctggcctgggaaagcgccgagcaggccgagaaatcggccaat
caggtcagtctcttcggcggcgatgacagcgatctggaagcgccgctggaatacgtgcag
gtgccgccctggagcgacaagcaacgcctgaccgaagagaagggcgcgctgggcttctat
ctgtccggccacctgttctcggcttacgaaaaggaagtgcgccgcttcgtgcgcaccaag
atcgccagcctggaaccctcctgggagccgcgcagcctggccggcatcatcaccggcgtg
cgggtgcagatgacccagcgcggcaagctggtgatctgcacgctcgacgatggcacgggc
gtgatcgaggccacgatctacaacgaattgttcgaacccttcaagcacctcatcaaggaa
gatgaattgctggtggtatcgggcaaggtctcggaagaccgcttcaatggcggattgcgg
gtggctgccgacaaggtgatggacctgggcgcggcgcgcatccagtacggtgtgcgcatg
gtggtgtcgatcaacaaggcgatcgaccccaaccacctgcgcgacaccttgtccgcacat
cggcaggagcaggggctgcccttcgtgatgcgctaccagcaggccgatgcggcctgcgag
gtggtgctgggcgacgcctggcggatcaatcccagcgatagcctgcagtcgacgttggtg
gcttcgtttggcaaggaagcggtggtggtcgagtattga
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