Herbaspirillum seropedicae SmR1: Hsero_3602
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Entry
Hsero_3602 CDS
T01268
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B protein
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hse03016
]
Hsero_3602 (truB)
Enzymes [BR:
hse01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Hsero_3602 (truB)
Transfer RNA biogenesis [BR:
hse03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Hsero_3602 (truB)
Prokaryotic type
Hsero_3602 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
ADJ65080
UniProt:
D8IQG8
LinkDB
All DBs
Position
complement(4129881..4130858)
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AA seq
325 aa
AA seq
DB search
MSAPPDTAQPRAKRGQPVRTPRLPRVPVHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGH
TGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEAVVHLGVRTDTGDTEGQVLSERPVEV
SVEQIEAAMAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVTIHALELLNY
QAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAG
ELEARKALLLPVDGLLRSFPAVQLSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSS
DAALLGTGLLQEYAILAPERLVSTA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctcctcctgatactgcgcaaccgcgcgccaaacgtggccagccggtccgcacg
ccacgtcttccgcgcgtgcccgtgcatggcgtgctgttgctggacaagccggtgggcctg
tcgtccaacgacgcgcttatccgcgccaagcgcatgctcaatgcgcccaaggcgggccat
accggcacgctggacccgtttgcgacggggctgttgccgctgtgcttcggcgaagccacc
aagttctcgcaggacttgctggaagccgacaagacctacgaggcagtggtccacctgggt
gtgcgcaccgataccggcgacaccgaagggcaggtcctcagcgagcgtcccgtcgaggtc
agcgtggagcagatcgaagcggccatggcgcaattccgtggccctatcagccaagtgccg
cccatgcactcggccttgaagcgcgacggcaagcccttgtacgaatatgcgcgcgccggc
atcacgctggagcgcgaagcccgcaacgtcaccatccacgcgctggaattgctgaattac
caggcgccgatgctgcgcatccgcgtcacctgcagcaaaggcacctacatccgcgtgctg
ggcgaagatatcggcgaggtgctgggctgcggcgcgcacctcaatgcgctgcgccgtatt
ggcgtgggtccgctgacgctggagggcgcggtcacgctggagagcgttgacgccgccggt
gagctggaagcccgcaaggccctgctgttgccggtggatggcctcttgcgcagcttccct
gcggtgcaactgagtgatgagctggcgcgccgcttcctgcacggccagcgcttgccgctg
ggcaaggaaggcgtggctgtgccccagcagactggtcgcgtacgcgtctaccgcagttcc
gatgctgccttgctgggcaccggactgttgcaggaatacgccatcctggcccccgaacgg
ctggtctccaccgcctga
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