Herbaspirillum seropedicae SmR1: Hsero_3726
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Entry
Hsero_3726 CDS
T01268
Name
(GenBank) deoxyribodipyrimidine photolyase protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3726
Enzymes [BR:
hse01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
Hsero_3726
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
Hsero_3726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
DUF6381
Motif
Other DBs
NCBI-ProteinID:
ADJ65204
UniProt:
D8IR78
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All DBs
Position
4264798..4266357
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AA seq
519 aa
AA seq
DB search
MSKDPSAPPRAATLRLILGDQLNPRHSWFDQCDDQVVYLLMEVRSETDYVLHHAQKVLAL
FAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDE
ALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEADGS
PTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRWPLN
REEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAEEAY
REGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTRMRC
LQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNTLGM
SQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPRQRHSEDACPYNALYWDFFLRHQER
FGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggacccttccgccccgccccgggccgccacgctgcgcctgatcctgggcgac
cagttgaacccccggcattcctggttcgaccagtgtgacgaccaggtggtctacctgctc
atggaagtacgcagcgagaccgactatgtactgcaccacgcgcagaaggtcctggccctc
tttgcggccatgcgcgacttcgccgcgcgtctcaaggctggcggccaccgggtgcgctac
atccggctcgacgaccccagcaaccgccagtcgctggtggacaatctcagcgccctggcg
cggcactaccaggccagccaggtgcaatggcaggcccccgacgagtggcgtgtcgatgag
gcgctgcggcagtgggcgcaagcacagccgctgcaaacctccatggccgacagcgagcac
ttcctcaccgatcgccacgaactgccccgcctcttcagcggccgcaagcagtggctgatg
gaacatttctaccgccagatgcggcggcgcttcgaactgttgctggaagccgacggcagc
ccgaccggcggccagtggaacttcgaccacgacaaccgcaaacgctggcccggcacgccc
gccgagccggccgactggcgccagccgcacgatcacagtgcgctctgggagatgctgcag
gcctgcgcggtgccgaccttcggcgatccccaggccagccagttgcgctggccgctgaac
cgcgaagaagcgctggcgcacctggaacacttcatcacccatgccctgccctgcttcggc
gactttgaagacgccatgagcagccgcgcccagcggctgttccattcgctgctgtcgttc
gccctgaacgtgaagatgctgcatccgctggaagtggtgcggcgcgccgaagaagcttac
cgcgagggccaggcgccgctggcggcggtggaaggctttgtgcgccagatcatcggctgg
cgtgaatacgtgcgcggcatctactggtcgcagatgcccggctatgaagaccgcaatgtg
ctggaccatggactgccgctgccggcctggttctggactggccagacccgcatgcgctgc
ctgcagcaggccatcggccagtccctgcagagcgcccacgcccatcacatccagcgcctg
atggtgatcggcaatttcgcgctgctggccggccttgatcccaaggccctgcaccagtgg
tacctgggcgtctacatcgatgccttcgaatgggtggaattgcccaacaccctgggcatg
agccagtgggccgacggcggcatcatcgccaccaagccctatgtcagcagcgccgcctat
atcgggcgcatgagcgactattgccagggctgcgcctacgaccccaggcagaggcatagc
gaggacgcctgtccttacaacgccctctactgggatttcttcctgcgccaccaggagcgc
ttcggcaagaacgcccgcatgggcatggcctaccagcagctacgcaagatggatacgcag
gaactggcccgcctgcgtgaacgcgcggctcacctgcgcgaacgcctggaccagctctga
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