Herbaspirillum seropedicae SmR1: Hsero_3863
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Entry
Hsero_3863 CDS
T01268
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid-CoA ligase protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00061
Fatty acid biosynthesis
hse00071
Fatty acid degradation
hse01100
Metabolic pathways
hse01212
Fatty acid metabolism
hse02024
Quorum sensing
hse04146
Peroxisome
Module
hse_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Hsero_3863 (fadD)
00071 Fatty acid degradation
Hsero_3863 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Hsero_3863 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hsero_3863 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hse01004
]
Hsero_3863 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hse04147
]
Hsero_3863 (fadD)
Enzymes [BR:
hse01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Hsero_3863 (fadD)
Lipid biosynthesis proteins [BR:
hse01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Hsero_3863 (fadD)
Exosome [BR:
hse04147
]
Exosomal proteins
Exosomal proteins of breast milk
Hsero_3863 (fadD)
Exosomal proteins of breast cancer cells
Hsero_3863 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADJ65341
UniProt:
D8IRZ8
LinkDB
All DBs
Position
complement(4422449..4424149)
Genome browser
AA seq
566 aa
AA seq
DB search
MERFWLASYPAGVPAEIDPGRYGSLVQMIDEAFVQHADRQAYVCMGKYLSYRELDSLSRA
LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG
AEAIFVLENFACTLQKVVAHTNIKHIVVASMGELLGALKGTLVNLVVRHVKKLVPAWSLP
NAITFSQALSQARGKTLQPVTLTHDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEW
LTPALKAGKPIDQLVFVCALPLYHIFALTVCNMLGTREGALNLLIPNPRDIPGFVKELAK
YKVNTFPAVNTLYNALLNNADFARLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY
GLSETSPIASANPCTIDEYTGTIGLPLPSTEFAILDDDGQPVPLGQPGEIAIRGPQVMPG
YWQRPDETAKVMTPDGFFKTGDIGVMDERGYTKIVDRKKDMILVSGFNVYPNEVEGVVAQ
HPGVLECACVGVPDEHTGEAVKLFVVRKDKTLSAAQLMDYCKEQFTGYKKPKYIEFRDEL
PKTNVGKILRRELRDEPAKAQQKQAA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggaaagattctggcttgcttcctatcccgcaggcgttcctgccgagatcgaccctggc
cgctatgggtcattggtgcagatgatcgacgaagccttcgtccagcatgccgaccgccag
gcttatgtctgcatgggcaagtacctcagctaccgtgaactggatagtctctcccgcgcc
ttgggcggctggctgcaaggcctgggcctgcagaagggcgcgcgcgtggccatcatgatg
cccaacgtgctgcagtatccgatcgccattgccgccatcctgcgcgccggttacaccgtg
gtcaacgtcaatccgctctataccgcgcgcgagctggaacaccagttgaaggactccggc
gccgaagccatcttcgtgctggaaaactttgcctgcaccctgcagaaggtggtggcccac
accaacatcaagcacatcgtcgtggccagcatgggcgagctgctgggcgcgctcaaggga
acgctggtgaacctggtggtgcgccacgtcaagaagctggtgccggcctggtcgctgccc
aacgccatcaccttcagccaggcgctgtcgcaggcgcgcggcaagaccttgcagccggtc
acgctgacccacgacgacatcgctttcctgcagtacaccggcggcaccacgggcgtggcc
aagggcgcggtgctgacccaccgcaacctggtggccaacgtgctgcaggccgaggaatgg
ctgaccccggcgctgaaggccggcaagcccatcgaccagctggtgtttgtctgtgcgctg
ccgctgtatcacatcttcgcgctgacggtgtgcaacatgctgggcacgcgcgaaggggcg
ctcaacctgctgatccccaatccgcgcgacatccccggcttcgtcaaggagctggccaag
tacaaggtcaacaccttcccggccgtcaacacgctctacaacgcgctgctcaacaatgcc
gatttcgcccggctcgatttttccggctaccgctgctgcgtaggcggcggcatggcggtg
cagaagagcgtggccgacaagtggaagaagctgaccggctgccccatcatcgaaggctac
ggcctgtcggaaacctcacccatcgccagcgccaatccctgcaccatcgacgagtacacc
ggcaccatcggcttgccgctgccctctaccgaattcgccatcctcgacgatgacggccag
ccggtgccgctgggccagcccggcgagatcgccatccgcggaccgcaggtgatgccgggt
tactggcagcgtccggacgagaccgccaaggtcatgacgccggacggcttcttcaagacc
ggcgacatcggcgtgatggacgagcgcggctataccaagatcgtggatcgcaagaaggac
atgatcctggtctcgggcttcaacgtctatcccaatgaggtcgaaggcgtggtggcgcag
cacccgggcgtgctggaatgcgcctgcgtgggcgtgccggacgagcacaccggcgaggcc
gtcaagctcttcgtggtgcgcaaggacaagaccttgagcgccgcgcagctcatggactac
tgcaaggagcagttcaccggttacaagaagcccaagtacatcgagttccgcgatgaactg
cccaagaccaatgtgggcaagatcctgcgccgtgaactgcgcgacgagccggccaaggcg
cagcagaagcaagccgcctga
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