Herbaspirillum seropedicae SmR1: Hsero_4293
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Entry
Hsero_4293 CDS
T01268
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase protein
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00300
Lysine biosynthesis
hse00470
D-Amino acid metabolism
hse01100
Metabolic pathways
hse01110
Biosynthesis of secondary metabolites
hse01120
Microbial metabolism in diverse environments
hse01230
Biosynthesis of amino acids
Module
hse_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Hsero_4293 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hsero_4293 (dapF)
Enzymes [BR:
hse01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Hsero_4293 (dapF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ADJ65762
UniProt:
D8IUN0
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All DBs
Position
4911500..4912363
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AA seq
287 aa
AA seq
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MKIKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDF
RYRIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDM
GAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP
VLSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRR
GLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELPDQL
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaattcaccaagatgcatggcgcgggcaacgactttgtcgtcctcgacgcc
atcaatcaatcgatctccctcagcccggcgcaatggcaattcattgcggatcgccgcttc
ggcattggcgccgaccagatgctggtggtggagaaggcgcgtggcgaaggtgtcgatttc
cgttatcgcatctacaacgccgatggcggcgaagtggaacagtgcggcaatggcgcacgc
gccttcgtcaagttcgtcaccgacaagggcttgaccagcaagcgcgccatccgtgtggaa
accatgtcgggcgtgatcgaaccgcgcctggaagacgatggccagatcacggtggacatg
ggcgctcccatcctcaccccggccgacgtccccttcgacagccacggcctgcaacaccgc
aacgaagccgaggacacgctgtggccgctggatgtagccggcaagaccacctggatctcg
gtcgtctcgatgggcaacccgcacgcagtacaggtggtggaggacagcgaagcagccccg
gtgctgagcgaggggccgctgatcgagcgtcatgaacgctttcccaagcgcgtcaatgcc
ggtttcatgcaggtggtggatcgccaccatgtgaacctgcgggtctatgaacgcggcgcc
ggcgaaaccctggcctgcggcaccggcgcctgcgccgccgtggtggcgggcatccgccgg
ggcctgctggattcgccggtggccgtacagacccatgggggcgtactgaacatcgcctgg
gccggccccggcgaagcggtcatgatgaccggcccggcggtctcggtgtacgaaggcgag
atcgagctgcctgatcagctctga
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