Herbaspirillum seropedicae SmR1: Hsero_4335
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Entry
Hsero_4335 CDS
T01268
Symbol
thdF
Name
(GenBank) tRNA modification (thiophene/furan oxidation) GTPase protein
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
hse
Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hse03016
]
Hsero_4335 (thdF)
Transfer RNA biogenesis [BR:
hse03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
Hsero_4335 (thdF)
Prokaryotic type
Methyltransferases
Hsero_4335 (thdF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
RsgA_GTPase
Dynamin_N
AIG1
Ras
GTP_EFTU
RapA_C
Motif
Other DBs
NCBI-ProteinID:
ADJ65803
UniProt:
D8IUS1
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All DBs
Position
complement(4960704..4962143)
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AA seq
479 aa
AA seq
DB search
MRRASITTKKQTQMTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRH
ATYLPFLNEDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIG
LRLAEPGEFTQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQ
VTRLRMLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFKHAAQGALLRDGLNAVLA
GKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGS
GPDEVERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRS
GHKAAVDKMPDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAAD
EHLAHAAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgagcttccatcacaacaaaaaagcagacgcagatgactttcgattcttccccc
atcgccgccatcgccaccgccccgggacgcggcggcatcggcgtggtccgcctttccggc
aagaacctggcgccggtgatccaggccgtgtgcggccgcgccagcctggcgccgcgccat
gccacctacttgcccttcctgaacgaagacggcagcgccatcgaccagggccttgcgatc
cacttcccggcgccgcattcctacactggcgaagacgtactggaactgcagggccacggc
ggcccggtggtgatgcagatgctgctggcgcgctgcgtgcaggccggcagcgagatcggc
ctgcgcctggccgagccgggtgaattcacccagcgcgccttcctcaacgacaagatcgac
ctggcccaggccgaggccgtggccgacctgatcgaagccaccaccgaggcagcggccaag
tcggcctcggagtcgctctccggcgcattctccaaggtcatccacgagctggtggaccag
gtcacgcggctgcgcatgctggtggaagcgaccctggacttccccgaggaagagatcgac
ttcctcaagcaaagcgatgcccgtggccagttggccaccatccgcagcacgctggaagag
gtcttcaagcacgccgcccagggcgccctgctgcgtgacggcctcaatgccgtgctggcg
ggcaagcccaacgtgggcaagtcatcgctgttgaacgtactggccggctccgatgtcgcc
atcgtcaccccgatcgccggcactacccgcgacaaggtcacccagaccatccagatcgaa
ggcatgccgctgaacatcatcgacactgccggcatccgtgaggcgggtgacgatggcagc
ggtccggacgaagtcgagcgcatcggcatcgagcgcacctgggccgaagtggccaaggcc
gacgtcatcctgcacatgctcgacgccgaccgtggtccgaccctggaagatgaaaagatc
acctcccgtttccccgacggcgtgcccatcatccgcatctggaacaagatcgaccgctcc
ggtcacaaggcggcggtggacaagatgcccgacgccacccacgtctacctgtcggcctcc
gaagggcagggcgtggacctgctgcgcgccgaactgctgcgcatcgccggctggcaacag
acggtggagtcgcgctacctggcgcgtgaacgccatctgctggcgctcaaggcggccgat
gaacacctggcccacgccgccgcccatgcggcgctggacaacgaggccggcgaacacgcg
ctggacctgtttgccgaagagctgcggctggcacaagagcgcctctccagcatcaccggc
aagttcacgccggatgacctgctgggcgtgatcttctcgcgcttctgtatcggcaagtaa
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