Herbaspirillum seropedicae SmR1: Hsero_4408
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Entry
Hsero_4408 CDS
T01268
Symbol
rfbG
Name
(GenBank) CDP-glucose-4,6-dehydratase protein
KO
K01709
CDP-glucose 4,6-dehydratase [EC:
4.2.1.45
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00541
Biosynthesis of various nucleotide sugars
hse01100
Metabolic pathways
hse01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
Hsero_4408 (rfbG)
Enzymes [BR:
hse01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.45 CDP-glucose 4,6-dehydratase
Hsero_4408 (rfbG)
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Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
RmlD_sub_bind
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
ADJ65875
UniProt:
D8IVR7
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All DBs
Position
5039084..5040157
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AA seq
357 aa
AA seq
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MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT
TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP
SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS
PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ
IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLEQAGATLSE
AVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggctaacttttggcgcgacaagcgcgttttcatcaccggtcacaccggcttcaaggga
agctggctgacgctgtggctgcacctgatgggcgcgaaagtcagcggctattccctgcct
gcgcccaccagccccagcctgttccacctggcgcgcctgcacaattgcgtgcagaccacc
accggtgatgtgcgcgaccccaagcacctggccgagaccatggcggcggtgcagcccgat
gtggtattccacctagccggacagccgcagatcgaacattcctacctgactccgctggac
accttcgccaccaacgtcatgggcacggcgcatctgctggaagccgtgcgcagcacgccc
agcgtgcgcgcggtggtggtggtcagcagcaacaagtgctatgagaaccgcgaatggcta
tggggctatcgcgaagacgaccccatgggcggccacgatcccttcagcagcagcaagggc
gcagccgaactggtgacggcggcctatcggcgctccttcttctcggccgatcccgacagt
ccggtcggcgtggccagcgtgcgcaccggcaacgtcatcggcggcggcgactttgcggca
gaccgcctgatccccgatttcatccgcgcgctggaaacggaccagcccgtcaccatccgc
cagccgcatgccgtgcggccctggcagttcgtgctggagccgctgtcgggctacttgcag
atcggcaagatgctctacgaacacggcgccagctacgccgaggcctggaacttcggcccc
accgacaccgacctgcagacagtgagccagctctgcgcgaccttcaaccactcgctgcag
aagaacgatgtcgaacccgtcgaggtccgcctggaacaggccggcgccaccctctccgaa
gcggtgctgcggctggatacgtccaaggcgcgccagcgcctagactggattccgcgcatg
gagctctacacggcgctggaactgaccgcgcaatggtatgccggctacctgaacaatgaa
gacctgcgcgccctgtccgagaatcagattgccttctaccagagtctgacataa
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