Herbaspirillum seropedicae SmR1: Hsero_4676
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Entry
Hsero_4676 CDS
T01268
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III protein
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hsero_4676 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_4676 (xthA)
Enzymes [BR:
hse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Hsero_4676 (xthA)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Hsero_4676 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
ADJ66142
UniProt:
D8IY20
LinkDB
All DBs
Position
5365063..5365839
Genome browser
AA seq
258 aa
AA seq
DB search
MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEQFLAPAGYVGHFHY
AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ
EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT
RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI
YKEQRFSDHAPLTVVYSD
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaatcgtctccgccaacctcaacggaatccgctcggccgccaagaagggcttc
ttcgaatggctgcaaaaggaagcgccggacttcgtctgcgtgcaggaactgaaggcccag
gcggccgacatgaccgagcaattcctggccccggccggctatgtcggccatttccactat
gcccagaagaagggttactcaggcgtgggcgtctacagccgccgccagccggattcggtg
cgcatcggctttggcaataccgaattcgatgacgaaggtcgctatgtcgaatgcgactac
ggcgacctgaccgtgatctcgctctatgcgccctcgggttcctccagcgaggaacgccag
gaagccaagttccgcttcatggaagccttcctgccgcacctgatggaactggaaaagagc
ggccgcgaagtggtcatctgcggcgactggaatatcgcccacaaggaaatcgacctgaag
aactggaagagcaaccagaagaattcgggcttcttgccggaagaacgcgcctggatgacg
cgcatcttcgaccagctgggcctggtggacgtgtaccgccgcctgcatcccgagaccacc
ggcgaggcctacacctggtggagcaatcgcggccaggcctgggccaacaacgtggggtgg
cgtatcgattaccacgtctccacgccgggcattgcggccaaggcggtgagtgcggcgatc
tacaaagagcagcgcttctcggatcatgcgccgttgacggtggtgtacagcgactga
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