Haemophilus seminalis: L3077_00090
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Entry
L3077_00090 CDS
T08114
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hsem
Haemophilus seminalis
Pathway
hsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3077_00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsem03019
]
L3077_00090
03009 Ribosome biogenesis [BR:
hsem03009
]
L3077_00090
Enzymes [BR:
hsem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3077_00090
Messenger RNA biogenesis [BR:
hsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3077_00090
Ribosome biogenesis [BR:
hsem03009
]
Prokaryotic type
rRNA helicases
L3077_00090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UJZ89953
LinkDB
All DBs
Position
20513..22351
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AA seq
612 aa
AA seq
DB search
MTDKITFNDLGLPGFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFA
LPLLAQINPSEKHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLE
VENFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYGNPQPMDLYR
IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTRV
LNKQMQMSFLGAVKSDSSRGGDDFNGKRKGRGGDFRGERGRNERSNDNRGNRKFNEKSNR
SFSDKPRRDRRG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaattacttttaatgacttaggcttacctgggttcatcttaaaagctgtt
tctgacttaggttttgaaaccccttctccaattcaacaagcttgtattccgcatttgctc
agtggcaatgatgtgctaggtatggcacaaacaggtagtggtaaaaccgccgcttttgct
ctgcctttattagcgcaaatcaatccaagtgaaaaacatccacaaatgttagtgatggcg
cctactcgcgaacttgctattcaagttgccgatgcgtgcgaacaatttgttaaatatgct
catggctcccgcattgttactttatatggtggccaacgttatgacatccaacttcgtgca
ttaaaacaaggcgcacaagtggttgtgggtacaccaggtcgtattcttgaccatattcgt
cgcggcacattaaatctttctgaacttcgttttatcgtattagatgaagctgatgaaatg
ctacgtatgggtttcattgatgatgtagaaactgtcatggcagaattaccagaaaatcac
caaacagcgttattctctgcaacaatgcctgaaccgatccgtcgtattacgaaacgtttt
atgaatgatccgaaagaagtgaagatcaaagttaataacgaaaatgctccagatattgag
caaagttgttggtatgtgcacggcgtgcgtaaaaacgaagcccttcttcgtttcttagaa
gtggaaaattttgatgcagcgattatctttgctcgcactaaaaccggtacgttagacatt
acagaactacttgaaaaaaatggtttccgttctgccgcacttaatggtgatatgacacaa
caactccgcgaacaaaccctcgatcgcttacgtaacggcagtttagatattgttgtggca
accgatgtggccgcacgcggtattgatattgaacgcatcagccttgtggtgaactacgac
attccacttgatgcagaatcttatgtgcaccgaattggccgtactggtcgtgcaggtcgt
tctggtcgtgctttattgtttgttgaacctcgcgagcgtcgtttactgcgtaatattgaa
cacctaatgaaaaaaggtatcaatgaagtagaattgccaaatcatcttgtgttacaagaa
tgccgccgcaaaaaattcgtcgcaaaaattacgaaacaactcgagcatcacgatttagag
caatatcgtagtttattagaagacttatttacagccgatcaggatcaagaagatattgct
gcagcaatgttgatgctgcttcaaggtaaacaaaaattaattcttcctccagatccgcca
atggaaaaacgtcgtcgtgaacgtaatgaacgaggtgatcgccgtgaaaatccacgttca
gctgaacgtcgtggcgaacgtaaaggctacggaaatccacaaccaatggatttatatcgt
attgaagtgggtcgtgctgatggcgtagaagttcgccatatcgtgggtgcgattgctaac
gaaggtgatatcaatagccgctatattggtcatatcaaactttatgatgactacacgacc
gttgaattgccacaaggtatgccgaaagaattacttcaacaattcggtaaaacacgcgta
ttgaataaacaaatgcaaatgtctttcttaggtgctgtgaagtctgatagttctcgtggt
ggtgatgattttaatggtaaacgtaaaggccgtggtggcgatttccgtggagaacgcgga
cgtaatgaacgcagtaatgacaatcgtggaaatcgtaaatttaatgaaaaaagtaaccgc
tcttttagcgataaaccacgccgtgatcgtcgaggatag
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