Haemophilus seminalis: L3077_00310
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Entry
L3077_00310 CDS
T08114
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hsem
Haemophilus seminalis
Pathway
hsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3077_00310 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsem03019
]
L3077_00310 (rne)
03009 Ribosome biogenesis [BR:
hsem03009
]
L3077_00310 (rne)
Enzymes [BR:
hsem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L3077_00310 (rne)
Messenger RNA biogenesis [BR:
hsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3077_00310 (rne)
Ribosome biogenesis [BR:
hsem03009
]
Prokaryotic type
rRNA processing factors
L3077_00310 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
UJZ89983
LinkDB
All DBs
Position
complement(57265..60078)
Genome browser
AA seq
937 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQNRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKA
KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSL
SILRLIEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDVIVAPNEAMETP
HFSVFRLRDGEEVNELSYNLAKIHCEKDESTEESLVSRNVETTVVTEQPVVESAAVALSI
SEAAPTPVERKSNEPSLLAKIIAKIKGLFASESEENKPKNNRTSRNSNRNPRRSQERRTS
RRPRSENNETERTEEQVRNIRERNQRRPRRNLVEESIAESVVNSTPVFEAQDERTEQVAQ
RRQRRDLRKRVRVEDNEMAVEHNENIVEKMTEVDVVEVQSVQNDEKTVRQNQERSERQDR
QRRTPRHLRAANNQRRRRNQEPKSPMPLFAAVASPELASGKAWVDYSTVNAQKENNFLSV
DELLEQEKTKKGFITPAMGIVVEEKSLEVKPALDFITQPANESVQKKVQESLERLNSHKP
QETVEFIESTITLNEPETVNEPAFVRTYEFNGRLGSISSVAHTKAEMTLAKASDEMPQPF
PIIEWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaaaaagaagagttgcgtgtagcgctagttgac
ggacagcgcttatttgatctggatattgaaagcccaggacatgagcaaaaaaaagcgaat
atctacaaagggaaaattactcgcattgagccaagcttagaagcggcttttgtagattat
ggtgcagaacgtcatggttttttaccattaaaagaaattgctcgtgaatatttccccgat
gattatgttttccagggtcgtccgaatattcgcgatatcttgagcgaaggccaagaagtt
atcgttcaagttaataaagaagagcgcggaaacaaaggcgctgccttaacaactttcgtt
tctcttgcgggcagttatttggtcattatgccaaataatccgcgtgccggtgggatctct
cgtcgtattgaaggggatgagcgcactgaattaaaagaggcattaagttcattagatgtg
cctgaaggcgtggggttgattgttcgtactgcaggtgtgggtaaatctccagaagagttg
cagtgggatttaaaagttttacttcaccattgggaagcgattaaacaagcatctcaaaat
cgtccagcacctttcttgattcaccaagaaagtgatgtgattgtacgtgctattcgtgat
tatttgcgccgtgatattggtgagattcttattgatagcccgaaagtgtttgaaaaagca
aaagagcatatcaaacttgttcgcccagatttcattaatcgtgtgaaactttatcaaggc
gaagtgcctcttttcagccactatcaaatcgaatctcaaatcgagtcagcattccaacgt
gaagtgcgtttaccttctggcggttcaatcgttattgatgtaacagaagccctgactgct
attgatattaactctgcgcgttctactcgcggtggagatattgaagaaacagcattaaat
actaaccttgaagcagcagatgaaattgcgcgtcaattacgtttgcgtgacttaggtggt
ttagttgttatcgatttcattgatatgacgccagttcgtcaccaacgagaagtggaaaat
cgtattcgtgatgcagttcgtcaagatcgtgctcgtattcaaattagtcgcatttctcgc
ttcggtttgttagaaatgtcacgtcagcgtttaagtccttcactaggtgagtcttcacat
cacatttgtcctcgttgtcaaggaacaggtaaagtgcgtgataacgaatctctttctttg
tctatcttgcgtttaatcgaggaagaagcattaaaagaaaacaccaagcaagtgcatacg
attgtgccagtacaaattgcttcttatcttcttaacgaaaaacgtaaagcgataagcaat
attgaaaaacgtcacaatgtagatgtcattgttgcaccaaatgaagcaatggaaacaccg
cattttagtgttttccgtttacgcgatggcgaagaggtgaatgaactgagttataattta
gcgaaaattcactgtgagaaagatgaaagtaccgaggaatctcttgtttctcgtaatgta
gaaacaacagtggttactgaacaacctgtggttgaaagtgcggcagtggcgctttctatt
tctgaagcagctccgactccagttgagcgtaaatcgaatgaaccgtctttgttagcgaaa
attatcgcgaagattaaaggtttgtttgcttctgaatccgaagaaaataaaccgaaaaat
aaccgcacttcgcgcaattctaatcgtaatccacgccgttcacaggagcgtcgtacttct
cgtcgaccacgttctgaaaataacgaaacggaaagaaccgaagaacaagttcgtaatatt
cgtgaacgtaatcaacgccgtcctcgccgtaacttagtggaagaaagtattgctgaaagt
gtggtaaattctacaccggtttttgaggctcaggatgaaagaactgagcaagtggcacaa
cgccgccaacgtcgtgatttacgtaaacgcgtgcgtgttgaagataatgagatggcagtt
gagcataacgaaaatattgttgaaaaaatgacggaagtggatgttgtcgaagttcagtcc
gttcaaaatgatgaaaaaacagttcgtcaaaaccaagaacgttctgaacgtcaagatcgt
caacgtcgtactccacgtcatttacgtgcagcgaataatcaacgtcgtcgccgtaatcaa
gagccaaaatcgccaatgccattatttgctgcagtggcttcacctgaattggcaagtgga
aaagcttgggtggactattcaacagtgaatgcgcagaaagaaaataatttcttatctgtg
gatgaattgcttgagcaagagaaaactaaaaaaggttttatcacgccagcaatgggaatt
gttgttgaagaaaaatctcttgaagtaaaaccagcattagattttattactcagccagct
aatgaatctgtacagaaaaaagtacaagaatctctagagcgtttaaattctcataaacct
caagaaacggttgaatttattgagtcaacgattaccctaaatgagcctgaaactgtaaat
gaaccagcctttgttcgtacttatgagtttaatgggcgtttaggtagcatttcttcagtt
gctcatacaaaagcagagatgactttggcgaaagcgagtgatgaaatgcctcagccattc
ccaattattgaatggcaagattctcgctattatttttacggtaaaggggcggcagggcat
cattgtgcgattagccatgtatattctgagcctacccgagcaaaatcagagtaa
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