Haemophilus seminalis: L3077_06450
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Entry
L3077_06450 CDS
T08114
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hsem
Haemophilus seminalis
Pathway
hsem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
L3077_06450 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsem03400
]
L3077_06450 (sbcB)
Enzymes [BR:
hsem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
L3077_06450 (sbcB)
DNA repair and recombination proteins [BR:
hsem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
L3077_06450 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L3077_06450 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L3077_06450 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
NA-iREase2
Motif
Other DBs
NCBI-ProteinID:
UJZ89433
LinkDB
All DBs
Position
1351351..1352772
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AA seq
473 aa
AA seq
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MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAV
MVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY
EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM
ADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMAPLVHVSGMLGNYRGNCT
WVAPLAWHPTNQNALIVCDLTGNIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH
INKCPILAPAKTLLPETANRLGIDRQLCLDNLTKLRASFDIREKVADIFNEERQFESNDN
VETELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRA
EQIKWQKYRQNKLEKRAVDFESSLQRLAEEHSDNPEKLSLLQQVYEYGIKLLG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatttcagcttttttatttacgattatgaaagttttggtgtaaatccagca
acagatcgccctgcgcaatttgcgggtatccgtactgatgctgattttaatatcattggt
gaaccaataatgttttattgtaaacaaaccaacgattatttaccggctcctgaagcggta
atggtgacaggaattacaccgcaagaatgtaatgaaaaggggctttctgagcctgaattt
gccgcaaatattttagccgaattttctcaaccaaatacttgtgtcatgggctataacaat
attcgatacgatgatgaaatgacgcgttatacattttatcgtaattttattgatccttac
gaatacagctggaaaaacgggaattcacgctgggatttgttagatttagtgcgagcttgt
tatgccttgcgtccagaagggattaattgggcttatgacgatgatggaatgccaagtttc
cgcttagaaaaactcactaaagcaaatggtattgaacatgaaaatgctcacgatgcaatg
gcggatgtatatgcaactattgctatggcgaaattaattaaagaaaaacagcctaaatta
tttcaatatttctttgaaaaccgaggtaaaaaagaaatcgaaaaattggttgatacaggc
gcaatggcgcctttagtccatgtttctggtatgttagggaattatcgtggaaattgcact
tgggttgcacctttagcttggcatccgacaaatcaaaacgcactcattgtttgtgattta
actggcaatatcgataatttattagccaaaagtgcggatgaattgcggacagatttatat
accaaaaaatcggaattagaagaaaggggagtttcatctgttccattaaagcttgtgcat
atcaataaatgtcctattttggcgccagccaaaaccttgttaccagaaacagcaaatcgc
ttgggcattgatcgacaattatgcttggataatcttacaaaattacgagcatcttttgat
attcgtgaaaaagtggcagatatttttaatgaagaacgtcaatttgaatcgaatgataat
gtagaaactgaattatacaatggctttttcagcaatgctgataaaaataatatgtctatt
ttacgtagtttacctgcagaaaaattagctgaacatggtttagcttttgaagataaacgt
atccctgaattattattccattatcgagcgcgccatttttataaaaccctcacacgcgct
gaacaaattaaatggcaaaaataccgacagaataaacttgaaaaaagagcggtagatttt
gaatcaagtttacaacgtttagctgaggaacattcagataaccctgaaaaactatctttg
ctacaacaagtatatgaatatggtataaaactactaggttag
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